ENSGALG00000004946


Gallus gallus

Features
Gene ID: ENSGALG00000004946
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : COL4A4 / Collagen alpha-4(IV) chain / collagen type IV alpha 4 chain / P53420 / Q9QZR9
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 9318986
Gene end: 9370173
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000007904
NCBI entrez gene - 424799     See in Manteia.
RefSeq - XM_015276986
RefSeq - XM_015276987
RefSeq - XM_015276988
swissprot - F1NIL4
Ensembl - ENSGALG00000004946
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a4ENSDARG00000002831Danio rerio
 COL4A4ENSG00000081052Homo sapiens
 Col4a4ENSMUSG00000067158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / collagen type IV alpha 5 chain / P29400* / collagen, type IV, alpha 5*ENSGALG0000000814146
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSGALG0000001684345
COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*ENSGALG0000003679844
COL4A6 / collagen type IV alpha 6 chain / Q14031* / collagen, type IV, alpha 6*ENSGALG0000000826642
COL4A3 / collagen type IV alpha 3 chain / Q01955* / Q9QZS0* / Collagen alpha-3(IV) chain Tumstatin*ENSGALG0000003861238
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*ENSGALG0000003802234
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *ENSGALG0000004358423
COL21A1 / collagen type XXI alpha 1 chain / Q96P44*ENSGALG0000001629218
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSGALG000000268363
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG000000431750


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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