ENSGALG00000043175


Gallus gallus

Features
Gene ID: ENSGALG00000043175
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : COL4A4 / Collagen alpha-4(IV) chain / collagen type IV alpha 4 chain / P53420 / Q9QZR9
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 9308914
Gene end: 9310262
  
Corresponding Affymetrix probe sets: GgaAffx.3084.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047052
swissprot - A0A1D5P300
Ensembl - ENSGALG00000043175
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a4ENSDARG00000002831Danio rerio
 COL4A4ENSG00000081052Homo sapiens
 Col4a4ENSMUSG00000067158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A6 / collagen type IV alpha 6 chain / Q14031* / collagen, type IV, alpha 6*ENSGALG0000000826672
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSGALG0000001684370
COL4A5 / collagen type IV alpha 5 chain / P29400* / collagen, type IV, alpha 5*ENSGALG0000000814164
COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*ENSGALG0000003679862
COL4A3 / collagen type IV alpha 3 chain / Q01955* / Q9QZS0* / Collagen alpha-3(IV) chain Tumstatin*ENSGALG0000003861256
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSGALG000000268366
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*ENSGALG000000380224
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *ENSGALG000000435844
COL21A1 / collagen type XXI alpha 1 chain / Q96P44*ENSGALG000000162924
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG000000049462


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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