ENSGALG00000036798


Gallus gallus

Features
Gene ID: ENSGALG00000036798
  
Biological name :COL4A1
  
Synonyms : COL4A1 / collagen type IV alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(IV) chain Arresten / P02462 / P02463
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 138793510
Gene end: 138903918
  
Corresponding Affymetrix probe sets: Gga.4258.1.S1_at (Chicken Array)   GgaAffx.10781.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049092
NCBI entrez gene - 395530     See in Manteia.
RefSeq - NM_001162399
RefSeq - XM_015277823
RefSeq - XM_015277824
RefSeq Peptide - NP_001155871
swissprot - A0A1D5P8P3
Ensembl - ENSGALG00000036798
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a1ENSDARG00000055009Danio rerio
 COL4A1ENSG00000187498Homo sapiens
 Col4a1ENSMUSG00000031502Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / collagen type IV alpha 5 chain / P29400* / collagen, type IV, alpha 5*ENSGALG0000000814162
COL4A3 / collagen type IV alpha 3 chain / Q01955* / Q9QZS0* / Collagen alpha-3(IV) chain Tumstatin*ENSGALG0000003861249
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSGALG0000001684347
COL4A6 / collagen type IV alpha 6 chain / Q14031* / collagen, type IV, alpha 6*ENSGALG0000000826645
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG0000000494633
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*ENSGALG0000003802231
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *ENSGALG0000004358422
COL21A1 / collagen type XXI alpha 1 chain / Q96P44*ENSGALG0000001629217
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSGALG000000268368
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG000000431757


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007528 neuromuscular junction development IEA
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 biological_processGO:0048514 blood vessel morphogenesis IEA
 biological_processGO:0061304 retinal blood vessel morphogenesis IEA
 biological_processGO:0061333 renal tubule morphogenesis IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0071711 basement membrane organization IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000016843 COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*  / complex / -
 ENSGALG00000036798 COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*  / complex / -






 

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