ENSG00000084636


Homo sapiens

Features
Gene ID: ENSG00000084636
  
Biological name :COL16A1
  
Synonyms : COL16A1 / collagen type XVI alpha 1 chain / Q07092
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p35.2
Gene start: 31652247
Gene end: 31704319
  
Corresponding Affymetrix probe sets: 204345_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000362771
Ensembl peptide - ENSP00000362776
Ensembl peptide - ENSP00000390281
Ensembl peptide - ENSP00000411457
Ensembl peptide - ENSP00000362772
NCBI entrez gene - 1307     See in Manteia.
OMIM - 120326
RefSeq - XM_017000341
RefSeq - XM_011540728
RefSeq - XM_011540729
RefSeq - XM_011540730
RefSeq - XM_017000338
RefSeq - XM_017000339
RefSeq - XM_017000340
RefSeq - NM_001856
RefSeq - XM_005270481
RefSeq - XM_011540722
RefSeq - XM_011540723
RefSeq - XM_011540724
RefSeq - XM_011540726
RefSeq - XM_011540727
RefSeq Peptide - NP_001847
swissprot - H7BY97
swissprot - H7BZL8
swissprot - H7C3F0
swissprot - A6NCT7
swissprot - Q07092
Ensembl - ENSG00000084636
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col16a1ENSDARG00000009194Danio rerio
 ENSGALG00000026836Gallus gallus
 Q8BLX7ENSMUSG00000040690Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815335
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105234
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749834
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756533
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903133
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943633
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487132
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229325
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474917


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway TAS
 biological_processGO:0007565 female pregnancy TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0033622 integrin activation IDA
 biological_processGO:0033627 cell adhesion mediated by integrin IDA
 biological_processGO:0051894 positive regulation of focal adhesion assembly IDA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005597 collagen type XVI trimer TAS
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IDA
 molecular_functionGO:0005178 integrin binding IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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