ENSG00000134871


Homo sapiens

Features
Gene ID: ENSG00000134871
  
Biological name :COL4A2
  
Synonyms : COL4A2 / collagen type IV alpha 2 chain / P08572
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q34
Gene start: 110305812
Gene end: 110513027
  
Corresponding Affymetrix probe sets: 211964_at (Human Genome U133 Plus 2.0 Array)   211966_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000353654
Ensembl peptide - ENSP00000481492
Ensembl peptide - ENSP00000383027
NCBI entrez gene - 1284     See in Manteia.
OMIM - 120090
RefSeq - NM_001846
RefSeq Peptide - NP_001837
swissprot - A2A352
swissprot - A0A087WY39
swissprot - A0A024RDW8
swissprot - P08572
Ensembl - ENSG00000134871
  
Related genetic diseases (OMIM): 614483 - Porencephaly 2, 614483
  614519 - {Hemorrhage, intracerebral, susceptibility to}, 614519
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a2ENSDARG00000104110Danio rerio
 COL4A2ENSGALG00000016843Gallus gallus
 Col4a2ENSMUSG00000031503Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756551
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105249
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815347
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749847
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903144
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943630
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463630
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229323
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474917


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR016187  C-type lectin fold
 IPR036954  Collagen IV, non-collagenous domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0014823 response to activity IEA
 biological_processGO:0016525 negative regulation of angiogenesis IDA
 biological_processGO:0030198 extracellular matrix organization NAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0035987 endodermal cell differentiation IEP
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer TAS
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005201 extracellular matrix structural constituent TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Anchoring fibril formation
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Scavenging by Class A Receptors
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002132 Porencephaly 
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000197565 COL4A6 / Q14031 / collagen type IV alpha 6 chain  / -
 ENSG00000188153 COL4A5 / P29400 / collagen type IV alpha 5 chain  / -
 ENSG00000187498 COL4A1 / P02462 / collagen type IV alpha 1 chain  / complex / -
 ENSG00000038945 MSR1 / P21757 / macrophage scavenger receptor 1  / complex / reaction
 ENSG00000134871 COL4A2 / P08572 / collagen type IV alpha 2 chain  / -






 

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