ENSG00000124749


Homo sapiens

Features
Gene ID: ENSG00000124749
  
Biological name :COL21A1
  
Synonyms : COL21A1 / collagen type XXI alpha 1 chain / Q96P44
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p12.1
Gene start: 56056590
Gene end: 56394094
  
Corresponding Affymetrix probe sets: 208096_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000390958
Ensembl peptide - ENSP00000359855
Ensembl peptide - ENSP00000433624
Ensembl peptide - ENSP00000444384
Ensembl peptide - ENSP00000244728
Ensembl peptide - ENSP00000359853
NCBI entrez gene - 81578     See in Manteia.
OMIM - 610002
RefSeq - XM_011514927
RefSeq - NM_001318751
RefSeq - NM_001318752
RefSeq - NM_030820
RefSeq - XM_006715223
RefSeq - XM_011514924
RefSeq - XM_011514925
RefSeq - XM_011514926
RefSeq Peptide - NP_110447
RefSeq Peptide - NP_001305681
RefSeq Peptide - NP_001305680
swissprot - H0Y4C9
swissprot - H0YDH6
swissprot - Q96P44
swissprot - A0A158RFW1
swissprot - A6PVD9
swissprot - F5GZK2
Ensembl - ENSG00000124749
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col21a1ENSDARG00000025320Danio rerio
 COL21A1ENSGALG00000016292Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815332
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756531
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749831
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105230
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903130
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487130
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463629
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943628
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229325


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0031012 extracellular matrix IDA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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