ENSG00000169436


Homo sapiens

Features
Gene ID: ENSG00000169436
  
Biological name :COL22A1
  
Synonyms : COL22A1 / collagen type XXII alpha 1 chain / Q8NFW1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q24.3
Gene start: 138588235
Gene end: 138914006
  
Corresponding Affymetrix probe sets: 228873_at (Human Genome U133 Plus 2.0 Array)   242326_at (Human Genome U133 Plus 2.0 Array)   243301_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000303153
Ensembl peptide - ENSP00000387655
Ensembl peptide - ENSP00000428244
NCBI entrez gene - 169044     See in Manteia.
OMIM - 610026
RefSeq - XM_017013152
RefSeq - NM_152888
RefSeq - XM_011516889
RefSeq - XM_017013150
RefSeq - XM_017013151
RefSeq - XM_011516883
RefSeq - XM_011516884
RefSeq - XM_011516885
RefSeq - XM_011516886
RefSeq - XM_011516887
RefSeq - XM_011516888
RefSeq Peptide - NP_690848
swissprot - Q8NFW1
swissprot - H0YAX7
Ensembl - ENSG00000169436
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL22A1ENSGALG00000038022Gallus gallus
 Col22a1ENSMUSG00000079022Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815335
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749834
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105233
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756533
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903132
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463632
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487132
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229327
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474916


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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