ENSG00000082293


Homo sapiens

Features
Gene ID: ENSG00000082293
  
Biological name :COL19A1
  
Synonyms : COL19A1 / collagen type XIX alpha 1 chain / Q14993
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q13
Gene start: 69866571
Gene end: 70209976
  
Corresponding Affymetrix probe sets: 211011_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000480474
Ensembl peptide - ENSP00000416556
Ensembl peptide - ENSP00000479481
NCBI entrez gene - 1310     See in Manteia.
OMIM - 120165
RefSeq - XM_017010259
RefSeq - NM_001858
RefSeq - XM_017010255
RefSeq - XM_017010256
RefSeq - XM_017010257
RefSeq - XM_017010258
RefSeq - XM_011535437
RefSeq - XM_011535438
RefSeq - XM_017010253
RefSeq - XM_017010254
RefSeq Peptide - NP_001849
swissprot - Q14993
swissprot - Q5JVU1
swissprot - A0A087WVJ7
Ensembl - ENSG00000082293
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL19A1ENSGALG00000043584Gallus gallus
 Q0VF58ENSMUSG00000026141Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943639
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815337
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105236
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756536
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463635
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749835
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903134
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487134
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474921


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0007155 cell adhesion NAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0098609 cell-cell adhesion NAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer TAS
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 molecular_functionGO:0005201 extracellular matrix structural constituent NAS
 molecular_functionGO:0030674 protein binding, bridging NAS


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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