ENSMUSG00000040690


Mus musculus

Features
Gene ID: ENSMUSG00000040690
  
Biological name :Col16a1
  
Synonyms : Col16a1 / Collagen alpha-1(XVI) chain / Q8BLX7
  
Possible biological names infered from orthology : collagen type XVI alpha 1 chain / Q07092
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D2.2
Gene start: 130047840
Gene end: 130099283
  
Corresponding Affymetrix probe sets: 10508533 (MoGene1.0st)   1427986_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000119219
Ensembl peptide - ENSMUSP00000035802
Ensembl peptide - ENSMUSP00000120339
Ensembl peptide - ENSMUSP00000121415
Ensembl peptide - ENSMUSP00000121209
Ensembl peptide - ENSMUSP00000120384
NCBI entrez gene - 107581     See in Manteia.
MGI - MGI:1095396
RefSeq - XM_017319910
RefSeq - XM_006502641
RefSeq - XM_006502642
RefSeq - XM_006502643
RefSeq - XM_006502647
RefSeq - XM_006502648
RefSeq - XM_011240386
RefSeq - XM_017319909
RefSeq - NM_028266
RefSeq - XM_006502639
RefSeq - XM_006502640
RefSeq Peptide - NP_082542
swissprot - A3KFV7
swissprot - A3KFV6
swissprot - E9Q0X4
swissprot - A3KFV1
swissprot - Q8BLX7
swissprot - A3KFV2
Ensembl - ENSMUSG00000040690
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col16a1ENSDARG00000009194Danio rerio
 ENSGALG00000026836Gallus gallus
 Q07092ENSG00000084636Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col4a5 / collagen, type IV, alpha 5 / P29400* / collagen type IV alpha 5 chain*ENSMUSG0000003127435
Col4a4 / Q9QZR9 / Collagen alpha-4(IV) chain / P53420* / collagen type IV alpha 4 chain*ENSMUSG0000006715834
Col4a3 / Q9QZS0 / Collagen alpha-3(IV) chain Tumstatin / Q01955* / collagen type IV alpha 3 chain*ENSMUSG0000007946534
Col4a6 / collagen, type IV, alpha 6 / Q14031* / collagen type IV alpha 6 chain*ENSMUSG0000003127333
Col4a1 / P02463 / Collagen alpha-1(IV) chain Arresten / P02462* / collagen type IV alpha 1 chain*ENSMUSG0000003150233
Col22a1 / collagen, type XXII, alpha 1 / Q8NFW1* / collagen type XXII alpha 1 chain*ENSMUSG0000007902233
Col4a2 / P08122 / Collagen alpha-2(IV) chain Canstatin / P08572* / collagen type IV alpha 2 chain*ENSMUSG0000003150332
Q0VF58 / Col19a1 / Collagen alpha-1(XIX) chain / Q14993* / collagen type XIX alpha 1 chain*ENSMUSG0000002614125


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion ISO
 biological_processGO:0033622 integrin activation IEA
 biological_processGO:0033627 cell adhesion mediated by integrin IEA
 biological_processGO:0051894 positive regulation of focal adhesion assembly IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005178 integrin binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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