ENSDARG00000009585


Danio rerio

Features
Gene ID: ENSDARG00000009585
  
Biological name :papola
  
Synonyms : papola / poly(A) polymerase alpha
  
Possible biological names infered from orthology : P51003 / PAPOLB / poly(A) polymerase beta / Q61183 / Q9NRJ5
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 4712776
Gene end: 4738133
  
Corresponding Affymetrix probe sets: Dr.12350.1.A1_at (Zebrafish Array)   Dr.12350.2.S1_at (Zebrafish Array)   Dr.12350.3.S1_at (Zebrafish Array)   Dr.25690.1.A1_at (Zebrafish Array)   NM_205758_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000050200
Ensembl peptide - ENSDARP00000053857
Ensembl peptide - ENSDARP00000106710
Ensembl peptide - ENSDARP00000126606
Ensembl peptide - ENSDARP00000126748
NCBI entrez gene - 404041     See in Manteia.
RefSeq - NM_205758
RefSeq - XM_005160349
RefSeq Peptide - NP_991321
swissprot - Q5SNY2
swissprot - Q5SNY3
swissprot - R4GE35
swissprot - R4GDQ1
swissprot - F1QJP5
ZFIN ID - ZDB-GENE-030131-3507
Ensembl - ENSDARG00000009585
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAPOLAENSGALG00000033099Gallus gallus
 P51003ENSG00000090060Homo sapiens
 PAPOLBENSG00000218823Homo sapiens
 PapolaENSMUSG00000021111Mus musculus
 PapolbENSMUSG00000074817Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
papolg / poly(A) polymerase gamma / Q6PCL9* / Q9BWT3*ENSDARG0000001214157


Protein motifs (from Interpro)
Interpro ID Name
 IPR002934  Polymerase, nucleotidyl transferase domain
 IPR007010  Poly(A) polymerase, RNA-binding domain
 IPR007012  Poly(A) polymerase, central domain
 IPR011068  Nucleotidyltransferase, class I-like, C-terminal
 IPR014492  Poly(A) polymerase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0031123 RNA 3"-end processing IEA
 biological_processGO:0043631 RNA polyadenylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004652 polynucleotide adenylyltransferase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr