ENSDARG00000010946


Danio rerio

Features
Gene ID: ENSDARG00000010946
  
Biological name :cbsb
  
Synonyms : cbsb / cystathionine-beta-synthase b
  
Possible biological names infered from orthology : CBS / CBSL / cystathionine-beta-synthase / cystathionine-beta-synthase like / P0DN79 / P35520 / Q91WT9
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 9180620
Gene end: 9228941
  
Corresponding Affymetrix probe sets: Dr.5504.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000022774
Ensembl peptide - ENSDARP00000111387
Ensembl peptide - ENSDARP00000157481
swissprot - F1QIC0
swissprot - Q58EC2
ZFIN ID - ZDB-GENE-021030-3
Ensembl - ENSDARG00000010946
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000019175Gallus gallus
 ENSGALG00000016196Gallus gallus
 CBSENSG00000160200Homo sapiens
 CBSLENSG00000274276Homo sapiens
 CbsENSMUSG00000024039Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbsa / cystathionine-beta-synthase a / CBS* / CBSL* / Q91WT9* / P0DN79* / P35520* / cystathionine-beta-synthase* / cystathionine-beta-synthase like*ENSDARG0000005350075


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001216  Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site
 IPR001926  Pyridoxal-phosphate dependent enzyme
 IPR005857  Cystathionine beta-synthase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006535 cysteine biosynthetic process from serine IEA
 biological_processGO:0008652 cellular amino acid biosynthetic process IEA
 biological_processGO:0019343 cysteine biosynthetic process via cystathionine IEA
 biological_processGO:0019344 cysteine biosynthetic process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004122 cystathionine beta-synthase activity IEA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0020037 heme binding IBA
 molecular_functionGO:0030170 pyridoxal phosphate binding IBA


Pathways (from Reactome)
Pathway description
Cysteine formation from homocysteine


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000010946 cbsb / cystathionine-beta-synthase b / CBS* / CBSL* / Q91WT9* / P0DN79* / P35520* / cystathionine-beta-synthase* / cystathionine-beta-synthase like*  / complex
 ENSDARG00000053500 cbsa / cystathionine-beta-synthase a / CBS* / CBSL* / Q91WT9* / P0DN79* / P35520* / cystathionine-beta-synthase* / cystathionine-beta-synthase like*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr