ENSG00000160200


Homo sapiens

Features
Gene ID: ENSG00000160200
  
Biological name :CBS
  
Synonyms : CBS / cystathionine-beta-synthase / P35520
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: -1
Band: q22.3
Gene start: 43053191
Gene end: 43076943
  
Corresponding Affymetrix probe sets: 1553972_a_at (Human Genome U133 Plus 2.0 Array)   212816_s_at (Human Genome U133 Plus 2.0 Array)   240517_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000405929
Ensembl peptide - ENSP00000388235
Ensembl peptide - ENSP00000402823
Ensembl peptide - ENSP00000408014
Ensembl peptide - ENSP00000344460
Ensembl peptide - ENSP00000352643
Ensembl peptide - ENSP00000381225
Ensembl peptide - ENSP00000381231
NCBI entrez gene - 875     See in Manteia.
NCBI entrez gene - 102724560     See in Manteia.
OMIM - 613381
RefSeq - XM_017028493
RefSeq - NM_001354009
RefSeq - NM_001354012
RefSeq - XM_011529773
RefSeq - XM_011529774
RefSeq - XM_011529775
RefSeq - XM_011529776
RefSeq - XM_011529777
RefSeq - XM_011529781
RefSeq - XM_011529782
RefSeq - XM_011529783
RefSeq - XM_017028489
RefSeq - XM_017028490
RefSeq - XM_017028491
RefSeq - XM_017028492
RefSeq - NM_000071
RefSeq - NM_001178008
RefSeq - NM_001178009
RefSeq - NM_001320298
RefSeq - NM_001321072
RefSeq - NM_001354006
RefSeq - NM_001354008
RefSeq Peptide - NP_001171479
RefSeq Peptide - NP_001340935
RefSeq Peptide - NP_001340937
RefSeq Peptide - NP_001340938
RefSeq Peptide - NP_001340941
RefSeq Peptide - NP_000062
RefSeq Peptide - NP_001171480
RefSeq Peptide - NP_001307227
RefSeq Peptide - NP_001308001
swissprot - H7C2H4
swissprot - H7C2W0
swissprot - H7C1W6
swissprot - P35520
swissprot - C9JMA6
Ensembl - ENSG00000160200
  
Related genetic diseases (OMIM): 236200 - Homocystinuria, B6-responsive and nonresponsive types, 236200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cbsaENSDARG00000053500Danio rerio
 cbsbENSDARG00000010946Danio rerio
 ENSGALG00000016196Gallus gallus
 CbsENSMUSG00000024039Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CBSL / P0DN79 / cystathionine-beta-synthase likeENSG00000274276100


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001216  Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site
 IPR001926  Pyridoxal-phosphate dependent enzyme
 IPR005857  Cystathionine beta-synthase
 IPR036052  Tryptophan synthase beta subunit-like PLP-dependent enzyme


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006535 cysteine biosynthetic process from serine IEA
 biological_processGO:0006563 L-serine metabolic process IDA
 biological_processGO:0006565 L-serine catabolic process IDA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0008652 cellular amino acid biosynthetic process IEA
 biological_processGO:0019343 cysteine biosynthetic process via cystathionine IEA
 biological_processGO:0019344 cysteine biosynthetic process IDA
 biological_processGO:0019346 transsulfuration TAS
 biological_processGO:0019448 L-cysteine catabolic process IDA
 biological_processGO:0042262 DNA protection IMP
 biological_processGO:0043418 homocysteine catabolic process IDA
 biological_processGO:0050667 homocysteine metabolic process IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0070814 hydrogen sulfide biosynthetic process ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004122 cystathionine beta-synthase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0019825 oxygen binding IDA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0020037 heme binding IMP
 molecular_functionGO:0030170 pyridoxal phosphate binding IDA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050421 nitrite reductase (NO-forming) activity IDA
 molecular_functionGO:0070025 carbon monoxide binding IDA
 molecular_functionGO:0070026 nitric oxide binding IDA
 molecular_functionGO:0072341 modified amino acid binding IDA
 molecular_functionGO:1904047 S-adenosyl-L-methionine binding IDA


Pathways (from Reactome)
Pathway description
Cysteine formation from homocysteine
Metabolism of ingested SeMet, Sec, MeSec into H2Se


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000541 Detached retina 
Show

 HP:0000545 Myopia 
Show

 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000678 Dental overcrowding 
Show

 HP:0000708 Behavioural/Psychiatric Abnormality 
Show

 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0000965 Cutis marmorata 
Show

 HP:0001010 Hypopigmentation of the skin 
Show

 HP:0001025 Urticaria 
Show

 HP:0001083 Ectopia lentis 
Show

 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001297 Stroke 
Show

 HP:0001376 Decreased mobility of joints 
Show

 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
Show

 HP:0001397 Hepatic steatosis 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001519 Dolichostenomelia "A tall and slim body build with increased arm span to height ratio (>1.05) and a reduced upper-to-lower segment ratio (<0.85), i.e., unusually long arms and legs. The extremities as well as the hands and feet are unusually slim." [HPO:curators]
Show

 HP:0001634 Mitral valve prolapse 
Show

 HP:0001658 Myocardial infarction 
Show

 HP:0001733 Pancreatitis 
Show

 HP:0001907 Thromboembolism 
Show

 HP:0001933 Subcutaneous hemorrhage 
Show

 HP:0002039 Anorexia 
Show

 HP:0002040 Esophageal varices 
Show

 HP:0002156 Homocystinuria 
Show

 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
Show

 HP:0002204 Pulmonary embolism 
Show

 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
Show

 HP:0002239 Gastrointestinal hemorrhage 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002299 Fine, brittle hair 
Show

 HP:0002637 Cerebral ischemia 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002751 Kyphoscoliosis 
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002808 Kyphosis 
Show

 HP:0002857 Genu valgum 
Show

 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
Show

 HP:0004337 Abnormality of amino acid metabolism 
Show

 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
Show

 HP:0004420 Arterial thrombosis 
Show

 HP:0004586 Biconcave vertebral bodies 
Show

 HP:0004936 Venous thrombosis 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0012075 Personality disorder "An abnormality of mental functioning affecting the personality and behavioural tendencies of an individual and characterized by a rigid and unhealthy pattern of thinking and behavior. The definition of a personal disorder implies that the abnormality is not the result of damage or insult to the brain or from another psychiatric disorder." [HPO:probinson]
Show

 HP:0040160 Generalized osteoporosis 
Show

 HP:0100026 Arteriovenous malformations 
Show

 HP:0100790 Hernia 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000160200 CBS / P35520 / cystathionine-beta-synthase  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr