ENSDARG00000012194


Danio rerio

Features
Gene ID: ENSDARG00000012194
  
Biological name :scp2a
  
Synonyms : scp2a / sterol carrier protein 2a
  
Possible biological names infered from orthology : P22307 / P32020 / SCP2 / sterol carrier protein 2 / sterol carrier protein 2, liver
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 6005199
Gene end: 6039757
  
Corresponding Affymetrix probe sets: Dr.11540.1.A1_at (Zebrafish Array)   NM_200865_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009052
NCBI entrez gene - 393839     See in Manteia.
RefSeq - NM_200865
RefSeq Peptide - NP_957159
swissprot - Q6P4V5
ZFIN ID - ZDB-GENE-040426-1846
Ensembl - ENSDARG00000012194
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCP2ENSGALG00000010652Gallus gallus
 SCP2ENSG00000116171Homo sapiens
 Scp2ENSMUSG00000028603Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scp2b / sterol carrier protein 2bENSDARG0000010235619
hsd17b4 / hydroxysteroid (17-beta) dehydrogenase 4 / P51659* / Q9UJQ7* / SCP2D1* / SCP2 sterol binding domain containing 1*ENSDARG0000010123919


Protein motifs (from Interpro)
Interpro ID Name
 IPR003033  SCP2 sterol-binding domain
 IPR016039  Thiolase-like
 IPR020613  Thiolase, conserved site
 IPR020615  Thiolase, acyl-enzyme intermediate active site
 IPR020616  Thiolase, N-terminal
 IPR020617  Thiolase, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008152 metabolic process IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEA


Pathways (from Reactome)
Pathway description
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
alpha-linolenic acid (ALA) metabolism
Beta-oxidation of pristanoyl-CoA
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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