ENSG00000116171


Homo sapiens

Features
Gene ID: ENSG00000116171
  
Biological name :SCP2
  
Synonyms : P22307 / SCP2 / sterol carrier protein 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p32.3
Gene start: 52927229
Gene end: 53051703
  
Corresponding Affymetrix probe sets: 201339_s_at (Human Genome U133 Plus 2.0 Array)   211733_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000437317
Ensembl peptide - ENSP00000436581
Ensembl peptide - ENSP00000491562
Ensembl peptide - ENSP00000360564
Ensembl peptide - ENSP00000360568
Ensembl peptide - ENSP00000360569
Ensembl peptide - ENSP00000384569
Ensembl peptide - ENSP00000386214
Ensembl peptide - ENSP00000396413
Ensembl peptide - ENSP00000406636
Ensembl peptide - ENSP00000431279
Ensembl peptide - ENSP00000432645
Ensembl peptide - ENSP00000434132
Ensembl peptide - ENSP00000435194
Ensembl peptide - ENSP00000435783
NCBI entrez gene - 6342     See in Manteia.
OMIM - 184755
RefSeq - NM_001193600
RefSeq - NM_001007098
RefSeq - NM_001007099
RefSeq - NM_001007100
RefSeq - NM_001007250
RefSeq - NM_001193599
RefSeq - NM_001193617
RefSeq - NM_002979
RefSeq - XM_005271103
RefSeq - XM_011541935
RefSeq - XM_017002045
RefSeq - XM_017002046
RefSeq Peptide - NP_001180528
RefSeq Peptide - NP_001180529
RefSeq Peptide - NP_001180546
RefSeq Peptide - NP_001317516
RefSeq Peptide - NP_001007100
RefSeq Peptide - NP_002970
RefSeq Peptide - NP_001007101
RefSeq Peptide - NP_001007099
RefSeq Peptide - NP_001007251
swissprot - H0YF61
swissprot - H0YCB0
swissprot - H0YD06
swissprot - H0YEU8
swissprot - P22307
swissprot - E9PLD1
Ensembl - ENSG00000116171
  
Related genetic diseases (OMIM): 613724 - ?Leukoencephalopathy with dystonia and motor neuropathy, 613724
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scp2aENSDARG00000012194Danio rerio
 SCP2ENSGALG00000010652Gallus gallus
 Scp2ENSMUSG00000028603Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P51659 / HSD17B4 / hydroxysteroid 17-beta dehydrogenase 4ENSG0000013383519
Q9UJQ7 / SCP2D1 / SCP2 sterol binding domain containing 1ENSG000001326319


Protein motifs (from Interpro)
Interpro ID Name
 IPR002155  Thiolase
 IPR003033  SCP2 sterol-binding domain
 IPR016039  Thiolase-like
 IPR020613  Thiolase, conserved site
 IPR020615  Thiolase, acyl-enzyme intermediate active site
 IPR020616  Thiolase, N-terminal
 IPR020617  Thiolase, C-terminal
 IPR036527  SCP2 sterol-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006694 steroid biosynthetic process IBA
 biological_processGO:0006699 bile acid biosynthetic process TAS
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0007031 peroxisome organization IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0015914 phospholipid transport IBA
 biological_processGO:0015918 sterol transport IEA
 biological_processGO:0032385 positive regulation of intracellular cholesterol transport IDA
 biological_processGO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase TAS
 biological_processGO:0036109 alpha-linolenic acid metabolic process TAS
 biological_processGO:1901373 lipid hydroperoxide transport IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005782 peroxisomal matrix TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000062 fatty-acyl-CoA binding IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0015248 sterol transporter activity IBA
 molecular_functionGO:0015485 cholesterol binding IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEA
 molecular_functionGO:0033814 propanoyl-CoA C-acyltransferase activity IEA
 molecular_functionGO:0036042 long-chain fatty acyl-CoA binding IDA
 molecular_functionGO:0050632 propionyl-CoA C2-trimethyltridecanoyltransferase activity TAS
 molecular_functionGO:0070538 oleic acid binding IDA


Pathways (from Reactome)
Pathway description
alpha-linolenic acid (ALA) metabolism
Peroxisomal protein import
TYSND1 cleaves peroxisomal proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000027 Azoospermia 
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 HP:0000473 Torticollis 
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 HP:0000570 Abnormality of saccadic eye movements "An `abnormality of eye movement` (HP:0000496) characterized by impairment of fast (saccadic) eye movements." [HPO:probinson]
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002346 Head tremor 
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 HP:0002352 Leukoencephalopathy 
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 HP:0002450 Abnormality of the motor neurons 
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 HP:0004409 Hyposmia "A decreased sensitivity to odorants (that is, a decreased ability to perceive odors)." [HPO:curators]
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010663 Abnormality of the thalamus "An abnormality of the `thalamus` (FMA:62007)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000156521 Q2T9J0 / TYSND1 / trypsin domain containing 1  / reaction






 

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