ENSG00000133835


Homo sapiens

Features
Gene ID: ENSG00000133835
  
Biological name :HSD17B4
  
Synonyms : HSD17B4 / hydroxysteroid 17-beta dehydrogenase 4 / P51659
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q23.1
Gene start: 119452443
Gene end: 119637199
  
Corresponding Affymetrix probe sets: 1563696_at (Human Genome U133 Plus 2.0 Array)   201413_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494785
Ensembl peptide - ENSP00000496432
Ensembl peptide - ENSP00000496091
Ensembl peptide - ENSP00000495180
Ensembl peptide - ENSP00000494992
Ensembl peptide - ENSP00000494892
Ensembl peptide - ENSP00000494808
Ensembl peptide - ENSP00000256216
Ensembl peptide - ENSP00000390208
Ensembl peptide - ENSP00000411960
Ensembl peptide - ENSP00000420914
Ensembl peptide - ENSP00000424613
Ensembl peptide - ENSP00000424940
Ensembl peptide - ENSP00000425993
Ensembl peptide - ENSP00000426272
Ensembl peptide - ENSP00000493579
Ensembl peptide - ENSP00000493642
Ensembl peptide - ENSP00000493801
Ensembl peptide - ENSP00000494133
Ensembl peptide - ENSP00000494316
Ensembl peptide - ENSP00000494542
Ensembl peptide - ENSP00000494737
NCBI entrez gene - 3295     See in Manteia.
OMIM - 601860
RefSeq - NM_001292028
RefSeq - NM_000414
RefSeq - NM_001199291
RefSeq - NM_001199292
RefSeq - NM_001292027
RefSeq Peptide - NP_000405
RefSeq Peptide - NP_001186220
RefSeq Peptide - NP_001186221
RefSeq Peptide - NP_001278956
RefSeq Peptide - NP_001278957
swissprot - P51659
swissprot - E7ET17
swissprot - E7ER27
swissprot - E7EPL9
swissprot - A0A0S2Z4J1
swissprot - G5E9S2
swissprot - E7EWE5
Ensembl - ENSG00000133835
  
Related genetic diseases (OMIM): 233400 - Perrault syndrome 1, 233400
  261515 - D-bifunctional protein deficiency, 261515
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hsd17b4ENSDARG00000101239Danio rerio
 HSD17B4ENSGALG00000002187Gallus gallus
 P51660ENSMUSG00000024507Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCP2 / P22307 / sterol carrier protein 2ENSG0000011617113
Q9UJQ7 / SCP2D1 / SCP2 sterol binding domain containing 1ENSG000001326318


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR002539  MaoC-like domain
 IPR003033  SCP2 sterol-binding domain
 IPR020904  Short-chain dehydrogenase/reductase, conserved site
 IPR027090  Enoyl-CoA hydratase 2
 IPR029069  HotDog domain superfamily
 IPR036291  NAD(P)-binding domain superfamily
 IPR036527  SCP2 sterol-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000038 very long-chain fatty acid metabolic process IEA
 biological_processGO:0001649 osteoblast differentiation HDA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006631 fatty acid metabolic process IEA
 biological_processGO:0006635 fatty acid beta-oxidation IEA
 biological_processGO:0006699 bile acid biosynthetic process TAS
 biological_processGO:0008209 androgen metabolic process IDA
 biological_processGO:0008210 estrogen metabolic process IDA
 biological_processGO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase TAS
 biological_processGO:0036109 alpha-linolenic acid metabolic process TAS
 biological_processGO:0036111 very long-chain fatty-acyl-CoA metabolic process IDA
 biological_processGO:0036112 medium-chain fatty-acyl-CoA metabolic process IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060009 Sertoli cell development IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005777 peroxisome IDA
 cellular_componentGO:0005778 peroxisomal membrane HDA
 cellular_componentGO:0005782 peroxisomal matrix TAS
 cellular_componentGO:0016020 membrane HDA
 molecular_functionGO:0003857 3-hydroxyacyl-CoA dehydrogenase activity TAS
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016508 long-chain-enoyl-CoA hydratase activity TAS
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0016853 isomerase activity IEA
 molecular_functionGO:0033989 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity TAS
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0044594 17-beta-hydroxysteroid dehydrogenase (NAD+) activity IDA


Pathways (from Reactome)
Pathway description
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
alpha-linolenic acid (ALA) metabolism
Beta-oxidation of pristanoyl-CoA
Beta-oxidation of very long chain fatty acids
Peroxisomal protein import
TYSND1 cleaves peroxisomal proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000107 Renal cysts 
Show

 HP:0000133 Gonadal dysgenesis 
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000268 Dolichocephaly 
Show

 HP:0000270 Delayed closure of fontanelles "Infants normally have two fontanels at birth, the diamond-shaped anterior fontanelle at the junction of the coronal and sagittal sutures, and the posterior fontanelle at the intersection of the occipital and parietal bones. The posterior fontanelle usually closes by the 8th week of life, and the anterior fontanel closes by the 18th month of life on average. This term applies if there is delay of closure of the fontanelles beyond the normal age." [HPO:curators]
Show

 HP:0000278 Retrognathia 
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000550 Abolished electroretinogram (ERG) 
Show

 HP:0000572 Visual loss 
Show

 HP:0000582 Upslanting palpebral fissures 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000762 Decreased nerve conduction velocities 
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000786 Primary amenorrhea 
Show

 HP:0000837 Elevated gonadotropins 
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0001171 Ectrodactyly (hands) 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001264 Spastic diplegia "Spasticity (neuromuscular hypertonia) primarily in the muscles of the legs, hips, and pelvis." [HPO:curators]
Show

 HP:0001265 Hyporeflexia 
Show

 HP:0001270 Motor retardation 
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001284 Areflexia 
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001396 Cholestasis 
Show

 HP:0001397 Hepatic steatosis 
Show

 HP:0001408 Bile duct proliferation 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001761 Pes cavus 
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0001765 Hammer toes 
Show

 HP:0001791 Fetal ascites 
Show

 HP:0001999 Facial dysmorphism 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
Show

 HP:0002171 Gliosis 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002539 Cortical dysplasia 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
Show

 HP:0002832 Calcific stippling "An abnormal punctate (speckled, dot-like) pattern of calcifications in soft tissues within or surrounding bones (as observed on radiographs)." [HPO:curators]
Show

 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
Show

 HP:0003199 Decreased muscle mass 
Show

 HP:0003593 Early onset 
Show

 HP:0003812 Phenotypic variability 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0005257 Thoracic hypoplasia 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0006872 Cerebral hypoplasia "Underdevelopment of the cerebrum." [HPO:curators]
Show

 HP:0007058 Generalized cerebral hypoplasia/atrophy 
Show

 HP:0007141 Sensorimotor neuropathy 
Show

 HP:0007266 Dysmyelination of the brain 
Show

 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
Show

 HP:0007371 Atrophy/Degeneration of the corpus callosum "The presence of atrophy (wasting) of the corpus callosum." [HPO:sdoelken]
Show

 HP:0007941 Limited extraocular movements 
Show

 HP:0008207 Primary adrenal insufficiency 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0030799 Scaphocephaly "Scaphocephaly is a subtype of dolichocephaly where the anterior and posterior aspects of the cranial vault are pointed (boat-shaped). Scaphocephaly is caused by a precocious fusion of sagittal suture without other associated synostosis." [HPO:probinson, PMID:16156241, PMID:23960302]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000133835 P51659 / HSD17B4 / hydroxysteroid 17-beta dehydrogenase 4  / complex
 ENSG00000156521 Q2T9J0 / TYSND1 / trypsin domain containing 1  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr