ENSDARG00000012222


Danio rerio

Features
Gene ID: ENSDARG00000012222
  
Biological name :nup35
  
Synonyms : nucleoporin 35 / nup35 / Q6P6X9
  
Possible biological names infered from orthology : Gm4353 / Nucleoporin NUP53 / predicted gene 4353 / Q8NFH5 / Q8R4R6
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 12259469
Gene end: 12401871
  
Corresponding Affymetrix probe sets: Dr.5851.1.S1_at (Zebrafish Array)   NM_200066_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116419
Ensembl peptide - ENSDARP00000149133
Ensembl peptide - ENSDARP00000123351
Ensembl peptide - ENSDARP00000117749
Ensembl peptide - ENSDARP00000033355
NCBI entrez gene - 337461     See in Manteia.
RefSeq - NM_200066
RefSeq Peptide - NP_956360
swissprot - B0R0Z4
swissprot - B0R0Z3
swissprot - B0R0Z6
swissprot - Q6P6X9
ZFIN ID - ZDB-GENE-030131-9407
Ensembl - ENSDARG00000012222
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002689Gallus gallus
 NUP35ENSG00000163002Homo sapiens
 Gm4353ENSMUSG00000091900Mus musculus
 Nup35ENSMUSG00000026999Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR007846  RNA-recognition motif (RRM) Nup35-type domain
 IPR017389  Nucleoporin, NUP53


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0006999 nuclear pore organization IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 cellular_componentGO:0044615 nuclear pore nuclear basket IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0005543 phospholipid binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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