ENSGALG00000002689


Gallus gallus

Features
Gene ID: ENSGALG00000002689
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Gm4353 / nucleoporin 35 / Nucleoporin NUP53 / NUP35 / predicted gene 4353 / Q8NFH5 / Q8R4R6
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 2224675
Gene end: 2232347
  
Corresponding Affymetrix probe sets: Gga.7527.1.S1_at (Chicken Array)   GgaAffx.21092.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004227
Ensembl peptide - ENSGALP00000061915
NCBI entrez gene - 423998     See in Manteia.
RefSeq - XM_015289352
RefSeq - XM_015289353
RefSeq - XM_421854
swissprot - E1C8U1
swissprot - A0A1L1RSX3
Ensembl - ENSGALG00000002689
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup35ENSDARG00000012222Danio rerio
 NUP35ENSG00000163002Homo sapiens
 Gm4353ENSMUSG00000091900Mus musculus
 Nup35ENSMUSG00000026999Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007846  RNA-recognition motif (RRM) Nup35-type domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR017389  Nucleoporin, NUP53


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0006999 nuclear pore organization IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 cellular_componentGO:0044615 nuclear pore nuclear basket IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0005543 phospholipid binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr