ENSDARG00000012422
Danio rerio | |
Features
| Gene ID: | ENSDARG00000012422 | | | | | Biological name : | col11a2 | | | | | Synonyms : | col11a2 / collagen, type XI, alpha 2 | | | | | Possible biological names infered from orthology : | Collagen alpha-2(XI) chain / collagen type XI alpha 2 chain / P13942 / Q64739 | | | | | Species: | Danio rerio | | | | | Chr. number: | 19 | | Strand: | -1 | | Band: | | | Gene start: | 7179740 | | Gene end: | 7225206 | | | | | Corresponding Affymetrix probe sets: | Dr.19643.1.A1_at (Zebrafish Array) DrAffx.2.30.S1_at (Zebrafish Array) NM_001079992_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000095569
Ensembl peptide - ENSDARP00000119303
Ensembl peptide - ENSDARP00000125963
Ensembl peptide - ENSDARP00000108486
NCBI entrez gene - 561679
See in Manteia.
RefSeq - NM_001079992
RefSeq - XM_009294049
RefSeq Peptide - NP_001073461
swissprot - F1R5X4
swissprot - E7F7J8
swissprot - F6NLZ6
swissprot - I3ISS1
ZFIN ID - ZDB-GENE-000208-23
Ensembl - ENSDARG00000012422
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| col5a1 / procollagen, type V, alpha 1 / O88207* / P20908* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain* | ENSDARG00000012593 | 67 | | col11a1a / collagen, type XI, alpha 1a / Q61245* / P12107* / COL11A1* / Collagen alpha-1(XI) chain * / collagen type XI alpha 1 chain* | ENSDARG00000026165 | 66 | | col11a1b / collagen, type XI, alpha 1b / Q61245* / P12107* / COL11A1* / Collagen alpha-1(XI) chain * / collagen type XI alpha 1 chain* | ENSDARG00000009014 | 63 | | col5a3a / collagen, type V, alpha 3a / COL5A3* / P25940* / collagen, type V, alpha 3* / collagen type V alpha 3 chain* | ENSDARG00000098294 | 58 | | col5a3b / collagen, type V, alpha 3b / COL5A3* / P25940* / collagen, type V, alpha 3* / collagen type V alpha 3 chain* | ENSDARG00000101816 | 54 | | col2a1a / collagen, type II, alpha 1a / COL2A1* / P02458* / P28481* / collagen type II alpha 1 chain* / Collagen alpha-1(II) chain Collagen alpha-1(II) chain Chondrocalcin* | ENSDARG00000069093 | 36 | | col1a1a / collagen, type I, alpha 1a / COL1A1* / P02452* / P11087* / Collagen alpha-1(I) chain * / collagen type I alpha 1 chain* | ENSDARG00000012405 | 35 | | col5a2a / collagen, type V, alpha 2a / COL5A2* / P05997* / Q3U962* / Collagen alpha-2(V) chain * / collagen type V alpha 2 chain* | ENSDARG00000031678 | 34 | | col1a1b / collagen, type I, alpha 1b / COL1A1* / P02452* / P11087* / Collagen alpha-1(I) chain * / collagen type I alpha 1 chain* | ENSDARG00000035809 | 34 | | col5a2b / collagen, type V, alpha 2b / COL5A2* / P05997* / Q3U962* / Collagen alpha-2(V) chain * / collagen type V alpha 2 chain* | ENSDARG00000024847 | 34 | | si:ch211-196i2.1 | ENSDARG00000007912 | 33 | | col2a1b / collagen, type II, alpha 1b / COL2A1* / P02458* / collagen type II alpha 1 chain* | ENSDARG00000011407 | 33 | | col1a2 / collagen, type I, alpha 2 / Q01149* / P08123* / Collagen alpha-2(I) chain * / collagen type I alpha 2 chain* | ENSDARG00000020007 | 32 | | si:dkey-61l1.4 | ENSDARG00000092567 | 27 | | si:dkey-21p1.3 | ENSDARG00000002295 | 26 | | col27a1b / collagen, type XXVII, alpha 1b / Q8IZC6* / Q5QNQ9* / COL27A1* / Collagen alpha-1(XXVII) chain * / collagen type XXVII alpha 1 chain* | ENSDARG00000099930 | 22 | | si:ch1073-286c18.5 | ENSDARG00000098567 | 1 |
Protein motifs (from Interpro)
| IPR000885 | Fibrillar collagen, C-terminal | | IPR001791 | Laminin G domain | | IPR008160 | Collagen triple helix repeat | | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | | IPR014716 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000107 | eye | eye mislocalised , abnormal |
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| | ZFA:0000135 | notochord | notochord undulate , abnormal |
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| | ZFA:0000547 | mouth | mouth absent , abnormal |
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| | ZFA:0001114 | head | head decreased size , abnormal
head malformed , abnormal |
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| | ZFA:0001205 | Meckel s cartilage | Meckels cartilage decreased size , abnormal
Meckels cartilage mislocalised , abnormal
Meckels cartilage malformed , abnormal |
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| | ZFA:0001239 | ceratobranchial 5 bone | ceratobranchial 5 bone composition , abnormal |
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| | ZFA:0001306 | pharyngeal arch | pharyngeal arch aplastic , abnormal |
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| | ZFA:0001321 | neurocranial trabecula | neurocranial trabecula decreased size , abnormal
neurocranial trabecula malformed , abnormal |
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| | ZFA:0001400 | ceratohyal cartilage | ceratohyal cartilage mislocalised , abnormal
ceratohyal cartilage malformed , abnormal |
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| | ZFA:0001405 | ethmoid cartilage | ethmoid cartilage decreased size , abnormal |
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| | ZFA:0001458 | cranial cartilage | cranial cartilage disorganized , abnormal |
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| | ZFA:0001460 | pharyngeal arch cartilage | pharyngeal arch cartilage disorganized , abnormal |
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| | ZFA:0001516 | ceratobranchial cartilage | ceratobranchial cartilage decreased size , abnormal |
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| | ZFA:0001633 | perichordal connective tissue | perichordal connective tissue morphology , abnormal |
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| | ZFA:0009084 | chondrocyte | chondrocyte disorganized , abnormal |
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Interacting proteins (from Reactome)
No match
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