ENSG00000204248


Homo sapiens

Features
Gene ID: ENSG00000204248
  
Biological name :COL11A2
  
Synonyms : COL11A2 / collagen type XI alpha 2 chain / P13942
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p21.32
Gene start: 33162681
Gene end: 33192499
  
Corresponding Affymetrix probe sets: 213870_at (Human Genome U133 Plus 2.0 Array)   216993_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000405520
Ensembl peptide - ENSP00000355123
Ensembl peptide - ENSP00000363840
Ensembl peptide - ENSP00000378620
Ensembl peptide - ENSP00000339915
NCBI entrez gene - 1302     See in Manteia.
OMIM - 120290
RefSeq - XM_017010251
RefSeq - NM_001163771
RefSeq - NM_080679
RefSeq - NM_080680
RefSeq - NM_080681
RefSeq - XM_011514299
RefSeq - XM_011514300
RefSeq - XM_011514302
RefSeq - XM_017010250
RefSeq Peptide - NP_542411
RefSeq Peptide - NP_542412
RefSeq Peptide - NP_001157243
RefSeq Peptide - NP_542410
swissprot - P13942
swissprot - Q4VXY6
swissprot - A2AAS7
swissprot - H0YIS1
swissprot - A0A0C4DFS1
Ensembl - ENSG00000204248
  
Related genetic diseases (OMIM): 601868 - Deafness, autosomal dominant 13, 601868
  609706 - Deafness, autosomal recessive 53, 609706
  614524 - Fibrochondrogenesis 2, 614524
  184840 - Otospondylomegaepiphyseal dysplasia, autosomal dominant, 184840
  215150 - Otospondylomegaepiphyseal dysplasia, autosomal recessive, 215150
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col11a2ENSDARG00000012422Danio rerio
 Q64739ENSMUSG00000024330Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL5A1 / P20908 / collagen type V alpha 1 chainENSG0000013063572
P12107 / COL11A1 / collagen type XI alpha 1 chainENSG0000006071870
COL5A3 / P25940 / collagen type V alpha 3 chainENSG0000008057358
COL2A1 / P02458 / collagen type II alpha 1 chainENSG0000013921940
COL1A1 / P02452 / collagen type I alpha 1 chainENSG0000010882138
COL5A2 / P05997 / collagen type V alpha 2 chainENSG0000020426238
COL3A1 / P02461 / collagen type III alpha 1 chainENSG0000016854238
Q8IZC6 / COL27A1 / collagen type XXVII alpha 1 chainENSG0000019673938
COL1A2 / P08123 / collagen type I alpha 2 chainENSG0000016469236
Q17RW2 / COL24A1 / collagen type XXIV alpha 1 chainENSG0000017150234


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development NAS
 biological_processGO:0001649 osteoblast differentiation IEA
 biological_processGO:0001894 tissue homeostasis IEA
 biological_processGO:0002062 chondrocyte differentiation IEA
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0030199 collagen fibril organization IDA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0051216 cartilage development IMP
 biological_processGO:0060021 roof of mouth development IMP
 biological_processGO:0060023 soft palate development IMP
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005592 collagen type XI trimer NAS
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005840 ribosome IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030020 extracellular matrix structural constituent conferring tensile strength NAS
 molecular_functionGO:0030674 protein binding, bridging NAS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Non-integrin membrane-ECM interactions
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000162 Glossoptosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000201 Pierre-Robin sequence 
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 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000364 Hearing abnormality 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000410 Mixed hearing loss 
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 HP:0000414 Bulbous nose 
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 HP:0000457 Flat nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000520 Proptosis 
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 HP:0000545 Myopia 
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 HP:0000750 Impaired language development 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000882 Hypoplastic scapulae 
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 HP:0000885 Broad ribs 
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 HP:0000926 Platyspondyly 
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 HP:0000940 Abnormality of the diaphyses 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000946 Hypoplastic ilia 
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 HP:0000951 Abnormality of the skin "An abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0001156 Brachydactyly 
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 HP:0001357 Plagiocephaly "An asymmetric head shape often resulting from premature closure of only one of the coronal sutures." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001591 Bell-shaped chest 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001804 Hypoplastic fingernails "Underdeveloped fingernails." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002194 Delayed gross motor development 
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 HP:0002656 Epiphyseal dysplasia 
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 HP:0002758 Osteoarthritis 
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 HP:0002808 Kyphosis 
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 HP:0002829 Arthralgia 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002983 Micromelia 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003026 Short long bones 
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 HP:0003037 Enlarged joints 
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 HP:0003088 Premature osteoarthritis 
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0003173 Hypoplastic pubic bones 
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 HP:0003175 Hypoplastic ischia 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003307 Hyperlordosis 
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003417 Coronal cleft vertebrae 
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004568 Beaking of vertebral bodies 
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 HP:0004679 Large tarsal bones 
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 HP:0005003 Absent-small capital femoral epiphyses 
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0005257 Thoracic hypoplasia 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005916 Abnormal metacarpal morphology "Irregularly shaped metacarpal bones of varying degree." [HPO:curators]
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 HP:0006237 Prominent interphalangeal joints 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0008587 Mild neurosensory hearing loss 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008905 Rhizomelic short stature 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010580 Enlarged epiphyses 
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 HP:0011481 Abnormality of the lacrimal duct "An abnormality of the ` lacrimal duct` (FMA:61063), a duct that drain tears from the conjunctiva, via the lacrimal puncta, into the lacrimal sac." [HPO:probinson]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011819 Submucous cleft soft palate "A cleft of the muscular (soft) portion of the palate that is covered by mucous membrane. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100777 Exostoses 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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