ENSG00000108821


Homo sapiens

Features
Gene ID: ENSG00000108821
  
Biological name :COL1A1
  
Synonyms : COL1A1 / collagen type I alpha 1 chain / P02452
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q21.33
Gene start: 50183289
Gene end: 50201632
  
Corresponding Affymetrix probe sets: 1556499_s_at (Human Genome U133 Plus 2.0 Array)   202310_s_at (Human Genome U133 Plus 2.0 Array)   202311_s_at (Human Genome U133 Plus 2.0 Array)   202312_s_at (Human Genome U133 Plus 2.0 Array)   217430_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000225964
Ensembl peptide - ENSP00000460459
NCBI entrez gene - 1277     See in Manteia.
OMIM - 120150
RefSeq - XM_011524341
RefSeq - NM_000088
RefSeq - XM_005257058
RefSeq - XM_005257059
RefSeq Peptide - NP_000079
swissprot - I3L3H7
swissprot - P02452
Ensembl - ENSG00000108821
  
Related genetic diseases (OMIM): 114000 - Caffey disease, 114000
  130060 - Ehlers-Danlos syndrome, arthrochalasia type, 1, 130060
  166200 - Osteogenesis imperfecta, type I, 166200
  166210 - Osteogenesis imperfecta, type II, 166210
  259420 - Osteogenesis imperfecta, type III, 259420
  166220 - Osteogenesis imperfecta, type IV, 166220
  166710 - {Bone mineral density variation QTL, osteoporosis}, 166710
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col1a1aENSDARG00000012405Danio rerio
 col1a1bENSDARG00000035809Danio rerio
 Col1a1ENSMUSG00000001506Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL2A1 / P02458 / collagen type II alpha 1 chainENSG0000013921972
COL3A1 / P02461 / collagen type III alpha 1 chainENSG0000016854262
COL5A2 / P05997 / collagen type V alpha 2 chainENSG0000020426261
COL1A2 / P08123 / collagen type I alpha 2 chainENSG0000016469260
COL5A1 / P20908 / collagen type V alpha 1 chainENSG0000013063545
P12107 / COL11A1 / collagen type XI alpha 1 chainENSG0000006071845
P13942 / COL11A2 / collagen type XI alpha 2 chainENSG0000020424843
COL5A3 / P25940 / collagen type V alpha 3 chainENSG0000008057343
Q8IZC6 / COL27A1 / collagen type XXVII alpha 1 chainENSG0000019673939
Q17RW2 / COL24A1 / collagen type XXIV alpha 1 chainENSG0000017150237


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001007  VWFC domain
 IPR008160  Collagen triple helix repeat
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0001649 osteoblast differentiation IEA
 biological_processGO:0001957 intramembranous ossification IEA
 biological_processGO:0001958 endochondral ossification IEA
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0007601 visual perception IMP
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0010718 positive regulation of epithelial to mesenchymal transition IDA
 biological_processGO:0010812 negative regulation of cell-substrate adhesion IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030168 platelet activation TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030199 collagen fibril organization IMP
 biological_processGO:0030335 positive regulation of cell migration IDA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0031667 response to nutrient levels IEA
 biological_processGO:0031960 response to corticosteroid IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0032964 collagen biosynthetic process IMP
 biological_processGO:0034504 protein localization to nucleus IDA
 biological_processGO:0034505 tooth mineralization IMP
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042542 response to hydrogen peroxide IEA
 biological_processGO:0043434 response to peptide hormone IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0043589 skin morphogenesis IMP
 biological_processGO:0044344 cellular response to fibroblast growth factor stimulus IEA
 biological_processGO:0044691 tooth eruption IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0048545 response to steroid hormone IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0048706 embryonic skeletal system development IMP
 biological_processGO:0050776 regulation of immune response TAS
 biological_processGO:0050900 leukocyte migration TAS
 biological_processGO:0051591 response to cAMP IEA
 biological_processGO:0055093 response to hyperoxia IEA
 biological_processGO:0060325 face morphogenesis IEA
 biological_processGO:0060346 bone trabecula formation IEA
 biological_processGO:0060351 cartilage development involved in endochondral bone morphogenesis IEA
 biological_processGO:0070208 protein heterotrimerization IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0071260 cellular response to mechanical stimulus IEA
 biological_processGO:0071300 cellular response to retinoic acid IEA
 biological_processGO:0071306 cellular response to vitamin E IEA
 biological_processGO:0071356 cellular response to tumor necrosis factor IEA
 biological_processGO:0071364 cellular response to epidermal growth factor stimulus IEA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IDA
 biological_processGO:1902617 response to fluoride IEA
 biological_processGO:1902618 cellular response to fluoride IEA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005584 collagen type I trimer IDA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0030141 secretory granule IEA
 cellular_componentGO:0031012 extracellular matrix ISS
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0042802 identical protein binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IDA


Pathways (from Reactome)
Pathway description
GPVI-mediated activation cascade
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Assembly of collagen fibrils and other multimeric structures
Cell surface interactions at the vascular wall
Integrin cell surface interactions
Anchoring fibril formation
Crosslinking of collagen fibrils
Syndecan interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Scavenging by Class A Receptors
GP1b-IX-V activation signalling
Platelet Adhesion to exposed collagen
Platelet Aggregation (Plug Formation)
MET activates PTK2 signaling
RUNX2 regulates osteoblast differentiation
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
Show

 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000163 Abnormality of the oral cavity "Abnormality of the opening or hollow part of the mouth." [HPO:curators]
Show

 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
Show

 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
Show

 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000324 Facial asymmetry 
Show

 HP:0000325 Triangular facies 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000362 Otosclerosis 
Show

 HP:0000365 Hearing loss 
Show

 HP:0000394 Lop ears "The term lop ear refers to excessive protrusion of the ear from the side of the head, that is, the external ear stands away from the head at a greater than normal angle (Normal angle of the auricle to the median plane averages 25 degrees in boys and 18 degrees in girls). Lop ears are usually larger than normal ears." [HPO:curators]
Show

 HP:0000444 Beaked nose 
Show

 HP:0000520 Proptosis 
Show

 HP:0000541 Detached retina 
Show

 HP:0000545 Myopia 
Show

 HP:0000592 Blue sclerae 
Show

 HP:0000703 Dentinogenesis imperfecta 
Show

 HP:0000707 Neurological abnormality "An abnormality of the central or peripheral nervous system." [HPO:curators]
Show

 HP:0000708 Behavioural/Psychiatric Abnormality 
Show

 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
Show

 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0000923 Beaded ribs "The presence of a row of beadlike prominences at the junction of a rib and its cartilag." [HPO:curators]
Show

 HP:0000926 Platyspondyly 
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0000963 Thin skin 
Show

 HP:0000974 Hyperextensible skin 
Show

 HP:0000977 Soft skin 
Show

 HP:0000978 Ecchymoses 
Show

 HP:0000993 Molluscoid pseudotumors 
Show

 HP:0001030 Fragile skin 
Show

 HP:0001058 Poor wound healing 
Show

 HP:0001072 Thickened skin 
Show

 HP:0001073 Cigarette-paper scars 
Show

 HP:0001075 Atrophic scars 
Show

 HP:0001083 Ectopia lentis 
Show

 HP:0001187 Hyperextensibility of the finger joints "The ability of the finger joints to move beyond their normal range of motion." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
Show

 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
Show

 HP:0001388 Joint laxity 
Show

 HP:0001482 Subcutaneous nodules 
Show

 HP:0001507 Growth abnormality 
Show

 HP:0001518 Low birth weight 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001622 Premature birth 
Show

 HP:0001623 breech presentation 
Show

 HP:0001634 Mitral valve prolapse 
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0001790 Nonimmune hydrops fetalis 
Show

 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
Show

 HP:0001945 Fever 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002010 Narrow maxilla 
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002194 Delayed gross motor development 
Show

 HP:0002586 Peritonitis 
Show

 HP:0002616 Aortic root dilatation 
Show

 HP:0002619 Varicose veins 
Show

 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
Show

 HP:0002645 Wormian bones 
Show

 HP:0002647 Aortic dissection "Aortic dissection refers to a tear in the intimal layer of the aorta causing a separation between the intima and the medial layers of the aorta." [HPO:curators]
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
Show

 HP:0002691 Platybasia 
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002758 Osteoarthritis 
Show

 HP:0002808 Kyphosis 
Show

 HP:0002816 Genu recurvatum 
Show

 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
Show

 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
Show

 HP:0003023 Bowing of limbs due to multiple fractures "Curvature of the shafts of the long bones due to multiple fractures." [HPO:curators]
Show

 HP:0003088 Premature osteoarthritis 
Show

 HP:0003100 Thin long bones 
Show

 HP:0003179 Protrusio acetabuli "Protrusion of the acetabulum, which is the socket that together with the head of the femur forms the heep joint. The protrusion is the result of increased depth of the socket and results in medial displacement of the femoral head." [HPO:curators]
Show

 HP:0003321 Biconcave flattened vertebrae 
Show

 HP:0003502 Mild short stature "A mild degree of short stature." [HPO:curators]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
Show

 HP:0004490 Calvarial hyperostosis "Excessive growth of the calvarial bone." [HPO:curators]
Show

 HP:0004586 Biconcave vertebral bodies 
Show

 HP:0004942 Aortic aneurysms 
Show

 HP:0005005 femoral bowing present at birth, straightening with time 
Show

 HP:0005100 premature birth following premature rupture of fetal membranes 
Show

 HP:0005222 Bowel diverticula 
Show

 HP:0005474 Poorly ossified calvaria "Abnormal reduction in ossification of the calvaria (roof of the skull consisting of the frontal bone, parietal bones, temporal bones, and occipital bone)." [HPO:curators]
Show

 HP:0005622 Widened long bones with translucent metaphyseal flaring 
Show

 HP:0005623 Absent ossification of skull vault "Absent ossification of the calvaria (vault of the skull)." [HPO:curators]
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0005731 Cortical irregularity "An abnormal irregularity of cortical bone." [HPO:curators]
Show

 HP:0005758 Foramen magnum lesion 
Show

 HP:0005791 Cortical thickening of long bone diaphyses "Abnormal thickening of the cortex of the diaphyseal region of long bones." [HPO:curators]
Show

 HP:0005855 Multiple prenatal fractures "The presence of bone fractures in the prenatal period that are diagnosed at birth or before." [HPO:curators]
Show

 HP:0005897 Severe osteoporosis "Severe degree of osteoporosis." [HPO:curators]
Show

 HP:0006316 Irregularly spaced teeth 
Show

 HP:0006367 Broad crumpled long bones 
Show

 HP:0006465 Periosteal thickening of long tubular bones 
Show

 HP:0008069 Neoplasia of the skin 
Show

 HP:0008780 Congenital bilateral hip dislocation 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
Show

 HP:0008921 Neonatal short-limbed dwarfism 
Show

 HP:0008947 Infantile muscular hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in infancy." [HPO:curators]
Show

 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
Show

 HP:0010485 Hyperextensibility at elbow "The ability of the elbow joint to move beyond its normal range of motion." [HPO:curators]
Show

 HP:0010500 Hyperextensibility of the knee "The ability of the knee joint to move beyond its normal range of motion." [HPO:curators]
Show

 HP:0010702 Increased immunoglobulin level "An abnormally increased level of immunoglobulin in blood." [HPO:probinson]
Show

 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
Show

 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
Show

 HP:0025014 Subcutaneous spheroids "Small, hard cyst-like nodules, freely moveable in the subcutis over the bony prominences of the legs and arms, which have an outer calcified layer with a translucent core on x-ray." [] {comment="PMID:20847697"}
Show

 HP:0100244 Fibrosarcoma "A fibroblastic sarcoma is a malignant tumor derived from fibrous connective tissue and characterized by immature proliferating fibroblasts or undifferentiated anaplastic spindle cells." [HPO:sdoelken]
Show

 HP:0100541 Femoral hernia "A hernia which occurs just below the inguinal ligament, where abdominal contents pass through a naturally occurring weakness called the femoral canal." [HPO:sdoelken]
Show

 HP:0100658 Cellulitis 
Show

 HP:0100963 Hyperaesthesia 
Show

 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000072682 P4HA2 / O15460 / prolyl 4-hydroxylase subunit alpha 2  / reaction
 ENSG00000108821 COL1A1 / P02452 / collagen type I alpha 1 chain  / - / reaction / complex
 ENSG00000164692 COL1A2 / P08123 / collagen type I alpha 2 chain  / - / reaction / complex
 ENSG00000185624 P4HB / P07237 / prolyl 4-hydroxylase subunit beta  / complex / reaction
 ENSG00000122884 P4HA1 / P13674 / prolyl 4-hydroxylase subunit alpha 1  / reaction
 ENSG00000149380 P4HA3 / Q7Z4N8 / prolyl 4-hydroxylase subunit alpha 3  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr