ENSDARG00000012405
Danio rerio | |
Features
| Gene ID: | ENSDARG00000012405 | | | | | Biological name : | col1a1a | | | | | Synonyms : | col1a1a / collagen, type I, alpha 1a | | | | | Possible biological names infered from orthology : | COL1A1 / Collagen alpha-1(I) chain / collagen type I alpha 1 chain / P02452 / P11087 | | | | | Species: | Danio rerio | | | | | Chr. number: | 3 | | Strand: | 1 | | Band: | | | Gene start: | 23221047 | | Gene end: | 23239458 | | | | | Corresponding Affymetrix probe sets: | Dr.20097.1.S1_s_at (Zebrafish Array) DrAffx.2.1.S1_at (Zebrafish Array) DrAffx.2.1.S1_s_at (Zebrafish Array) NM_199214_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000003177
NCBI entrez gene - 337158
See in Manteia.
RefSeq - NM_199214
RefSeq Peptide - NP_954684
swissprot - F1QJC9
ZFIN ID - ZDB-GENE-030131-9102
Ensembl - ENSDARG00000012405
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| col1a1b / collagen, type I, alpha 1b / COL1A1* / P02452* / P11087* / Collagen alpha-1(I) chain * / collagen type I alpha 1 chain* | ENSDARG00000035809 | 77 | | col2a1a / collagen, type II, alpha 1a / COL2A1* / P02458* / P28481* / collagen type II alpha 1 chain* / Collagen alpha-1(II) chain Collagen alpha-1(II) chain Chondrocalcin* | ENSDARG00000069093 | 70 | | col2a1b / collagen, type II, alpha 1b / COL2A1* / P02458* / collagen type II alpha 1 chain* | ENSDARG00000011407 | 64 | | col5a2a / collagen, type V, alpha 2a / COL5A2* / P05997* / Q3U962* / Collagen alpha-2(V) chain * / collagen type V alpha 2 chain* | ENSDARG00000031678 | 58 | | col1a2 / collagen, type I, alpha 2 / Q01149* / P08123* / Collagen alpha-2(I) chain * / collagen type I alpha 2 chain* | ENSDARG00000020007 | 58 | | col5a2b / collagen, type V, alpha 2b / COL5A2* / P05997* / Q3U962* / Collagen alpha-2(V) chain * / collagen type V alpha 2 chain* | ENSDARG00000024847 | 54 | | col5a1 / procollagen, type V, alpha 1 / O88207* / P20908* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain* | ENSDARG00000012593 | 43 | | col11a1a / collagen, type XI, alpha 1a / Q61245* / P12107* / COL11A1* / Collagen alpha-1(XI) chain * / collagen type XI alpha 1 chain* | ENSDARG00000026165 | 43 | | col11a2 / collagen, type XI, alpha 2 / Q64739* / P13942* / Collagen alpha-2(XI) chain * / collagen type XI alpha 2 chain* | ENSDARG00000012422 | 43 | | col11a1b / collagen, type XI, alpha 1b / Q61245* / P12107* / COL11A1* / Collagen alpha-1(XI) chain * / collagen type XI alpha 1 chain* | ENSDARG00000009014 | 42 | | col5a3a / collagen, type V, alpha 3a / COL5A3* / P25940* / collagen, type V, alpha 3* / collagen type V alpha 3 chain* | ENSDARG00000098294 | 42 | | col5a3b / collagen, type V, alpha 3b / COL5A3* / P25940* / collagen, type V, alpha 3* / collagen type V alpha 3 chain* | ENSDARG00000101816 | 41 | | si:ch211-196i2.1 | ENSDARG00000007912 | 38 | | si:dkey-21p1.3 | ENSDARG00000002295 | 32 | | si:dkey-61l1.4 | ENSDARG00000092567 | 31 | | col27a1b / collagen, type XXVII, alpha 1b / Q8IZC6* / Q5QNQ9* / COL27A1* / Collagen alpha-1(XXVII) chain * / collagen type XXVII alpha 1 chain* | ENSDARG00000099930 | 25 | | si:ch1073-286c18.5 | ENSDARG00000098567 | 1 |
Protein motifs (from Interpro)
| IPR000885 | Fibrillar collagen, C-terminal | | IPR001007 | VWFC domain | | IPR008160 | Collagen triple helix repeat | | IPR014716 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000040 | median fin fold | median fin fold decreased length , abnormal
median fin fold undulate , abnormal
median fin fold decreased size , abnormal |
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| | ZFA:0000076 | swim bladder | swim bladder quality , abnormal |
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| | ZFA:0000108 | fin | fin deformed , abnormal
fin undulate , abnormal
fin malformed , abnormal
fin decreased size , abnormal |
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| | ZFA:0000126 | centrum | centrum ossification delayed , abnormal |
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| | ZFA:0000292 | surface structure | surface structure quality , abnormal |
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| | ZFA:0000434 | skeletal system | skeletal system quality , abnormal |
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| | ZFA:0000538 | rib | rib deformed , abnormal |
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| | ZFA:0001058 | caudal fin | caudal fin morphology , abnormal
caudal fin morphology , ameliorated |
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| | ZFA:0001069 | ventral fin fold | ventral fin fold decreased size , abnormal |
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| | ZFA:0001094 | whole organism | whole organism shape , abnormal
whole organism decreased length , abnormal |
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| | ZFA:0001114 | head | head flattened , abnormal |
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| | ZFA:0001115 | trunk | trunk shortened , abnormal |
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| | ZFA:0001161 | pectoral fin | pectoral fin undulate , abnormal |
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| | ZFA:0001184 | pelvic fin | pelvic fin atrophied , abnormal
pelvic fin kinked , abnormal |
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| | ZFA:0001189 | vertebra | vertebra decreased mass density , abnormal
vertebra fused with vertebra , abnormal
vertebra composition , abnormal
vertebra deformed , abnormal |
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| | ZFA:0001336 | neural spine | neural spine sloped , abnormal
neural spine sloped , ameliorated |
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| | ZFA:0001554 | lepidotrichium | lepidotrichium decreased mass density , abnormal
lepidotrichium increased thickness , abnormal
lepidotrichium malformed , abnormal |
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| | ZFA:0005435 | actinotrichium | actinotrichium absent , abnormal
actinotrichium malformed , abnormal
actinotrichium decreased amount , abnormal |
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| | ZFA:0005621 | bone tissue | bone tissue collagen type I trimer physical quality , abnormal |
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| | ZFA:0009031 | osteoblast | osteoblast endoplasmic reticulum lumen increased size , abnormal
osteoblast endoplasmic reticulum lumen size , ameliorated |
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Interacting proteins (from Reactome)
No match
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