ENSG00000060718


Homo sapiens

Features
Gene ID: ENSG00000060718
  
Biological name :COL11A1
  
Synonyms : COL11A1 / collagen type XI alpha 1 chain / P12107
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p21.1
Gene start: 102876467
Gene end: 103108872
  
Corresponding Affymetrix probe sets: 204320_at (Human Genome U133 Plus 2.0 Array)   229271_x_at (Human Genome U133 Plus 2.0 Array)   37892_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000493821
Ensembl peptide - ENSP00000494179
Ensembl peptide - ENSP00000494909
Ensembl peptide - ENSP00000494583
Ensembl peptide - ENSP00000302551
Ensembl peptide - ENSP00000351163
Ensembl peptide - ENSP00000359114
Ensembl peptide - ENSP00000408640
Ensembl peptide - ENSP00000410177
Ensembl peptide - ENSP00000426533
Ensembl peptide - ENSP00000489428
NCBI entrez gene - 1301     See in Manteia.
OMIM - 120280
RefSeq - XM_017000335
RefSeq - XM_017000336
RefSeq - NM_001190709
RefSeq - XM_017000334
RefSeq - NM_001854
RefSeq - NM_080629
RefSeq - NM_080630
RefSeq - XM_017000337
RefSeq Peptide - NP_001845
RefSeq Peptide - NP_001177638
RefSeq Peptide - NP_542196
RefSeq Peptide - NP_542197
swissprot - P12107
swissprot - C9JMN2
swissprot - H7C381
swissprot - A0A0U1RRA7
Ensembl - ENSG00000060718
  
Related genetic diseases (OMIM): 154780 - Marshall syndrome, 154780
  228520 - Fibrochondrogenesis 1, 228520
  603932 - {Lumbar disc herniation, susceptibility to}, 603932
  604841 - Stickler syndrome, type II, 604841
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col11a1aENSDARG00000026165Danio rerio
 col11a1bENSDARG00000009014Danio rerio
 COL11A1ENSGALG00000005180Gallus gallus
 Q61245ENSMUSG00000027966Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL5A1 / P20908 / collagen type V alpha 1 chainENSG0000013063575
P13942 / COL11A2 / collagen type XI alpha 2 chainENSG0000020424864
COL5A3 / P25940 / collagen type V alpha 3 chainENSG0000008057357
COL2A1 / P02458 / collagen type II alpha 1 chainENSG0000013921938
COL3A1 / P02461 / collagen type III alpha 1 chainENSG0000016854236
COL1A1 / P02452 / collagen type I alpha 1 chainENSG0000010882136
COL5A2 / P05997 / collagen type V alpha 2 chainENSG0000020426236
Q8IZC6 / COL27A1 / collagen type XXVII alpha 1 chainENSG0000019673935
COL1A2 / P08123 / collagen type I alpha 2 chainENSG0000016469234
Q17RW2 / COL24A1 / collagen type XXIV alpha 1 chainENSG0000017150231


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001502 cartilage condensation IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0002063 chondrocyte development IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0006029 proteoglycan metabolic process IEA
 biological_processGO:0007601 visual perception IMP
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0030198 extracellular matrix organization NAS
 biological_processGO:0030199 collagen fibril organization NAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0035987 endodermal cell differentiation IEP
 biological_processGO:0035989 tendon development IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IMP
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0055010 ventricular cardiac muscle tissue morphogenesis IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005592 collagen type XI trimer NAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent NAS
 molecular_functionGO:0030674 protein binding, bridging NAS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050840 extracellular matrix binding NAS


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Non-integrin membrane-ECM interactions
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000162 Glossoptosis 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000201 Pierre-Robin sequence 
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 HP:0000215 Prominent upper lip 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000364 Hearing abnormality 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000483 Astigmatism 
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 HP:0000485 Megalocornea "An enlargement of the `cornea` (FMA:58238) with normal clarity and function. Megalocornea is diagnosed with a horizontal corneal diameter of 12 mm or more at birth or 13 mm or more after two years of age." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000535 Sparse eyebrows 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000565 Esotropia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000655 Vitreoretinal degeneration 
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 HP:0000675 Prominent upper central incisors 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000882 Hypoplastic scapulae 
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 HP:0000883 Thin ribs 
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 HP:0000885 Broad ribs 
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 HP:0000890 Long clavicles 
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 HP:0000907 Anterior rib cupping 
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 HP:0000922 Posterior rib cupping 
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 HP:0000926 Platyspondyly 
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 HP:0000940 Abnormality of the diaphyses 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000946 Hypoplastic ilia 
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 HP:0000947 Dumbbell-shaped long bones 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001083 Ectopia lentis 
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 HP:0001156 Brachydactyly 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001357 Plagiocephaly "An asymmetric head shape often resulting from premature closure of only one of the coronal sutures." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001591 Bell-shaped chest 
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 HP:0001622 Premature birth 
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 HP:0001655 Patent foramen ovale 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001789 Hydrops fetalis 
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001804 Hypoplastic fingernails "Underdeveloped fingernails." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002655 Spondyloepiphyseal dysplasia 
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 HP:0002656 Epiphyseal dysplasia 
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002688 Absent frontal sinuses 
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 HP:0002738 Hypoplastic frontal sinuses 
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 HP:0002758 Osteoarthritis 
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 HP:0002781 Upper airway obstruction 
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 HP:0002829 Arthralgia 
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 HP:0002857 Genu valgum 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0002986 Radial bowing 
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 HP:0003026 Short long bones 
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 HP:0003031 Ulnar bowing "Bending of the diaphysis (shaft) of the ulna, usually in the convex posterior direction." [HPO:curators]
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 HP:0003038 Fibular hypoplasia "Underdevelopment of the fibula." [HPO:curators]
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 HP:0003040 Arthropathy 
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0003175 Hypoplastic ischia 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003301 Irregular vertebral endplates "An irregular surface of the vertebral end plates, which are normally relatively smooth." [HPO:curators]
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003375 Narrow greater sacrosciatic notches "A narrowing of the sacrosciatic notch, i.e., the deep indentation in the posterior border of the hip bone at the point of union of the ilium and ischium." [HPO:curators]
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 HP:0003826 Stillborn or neonatal death 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004327 Abnormality of the vitreous humor 
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 HP:0005257 Thoracic hypoplasia 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005442 Widely patent coronal suture "The presence of a coronal suture (the cranial suture that separates the frontal and parietal bones) that is not ossified but rather wide open at an age when it is normally closed." [HPO:curators]
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 HP:0005462 Calcification of falx cerebri 
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 HP:0005476 Widely patent sagittal suture "The presence of a sagittal suture (the cranial suture that separates the left and right parietal bones) that is not ossified but rather wide open at an age when it is normally closed." [HPO:curators]
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 HP:0005622 Widened long bones with translucent metaphyseal flaring 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006095 Wide tufts of distal phalanges 
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 HP:0006407 Small, irregular distal femoral epiphyses 
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 HP:0006456 Small, irregular proximal tibial epiphyses 
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 HP:0006645 Thin, long clavicles 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008451 Posterior vertebral hypoplasia 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0010669 Hypoplasia of the zygomatic bone "Underdevelopment of the `zygomatic bone` (FMA:52747)." [HPO:probinson]
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 HP:0011003 Severe Myopia 
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0012019 Lens luxation "Complete dislocation of the lens of the eye." [HPO:probinson]
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 HP:0012283 Small distal femoral epiphysis "Reduced size of the `Distal epiphysis of femur` (FMA:32844)." [HPO:probinson]
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 HP:0012284 Small proximal tibial epiphyses "Reduced size of the proximal epiphysis of the tibia." [HPO:probinson]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0100250 Meningeal calcification "`Calcium deposition` (MPATH:36) affecting the `Meninges` (FMA:231572)." [HPO:sdoelken]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100807 Long fingers "The middle finger is more than 2 SD above the mean for newborns 27 to 41 weeks EGA or above the 97th centile for children from birth to 16 years of age AND the five digits retain their normal length proportions relative to each other (i.e., it is not the case that the middle finger is the only lengthened digit), or, Fingers that appear disproportionately long compared to the palm of the hand." [pmid:19125433]
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 HP:0100865 Broad ischia 
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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