ENSG00000130635


Homo sapiens

Features
Gene ID: ENSG00000130635
  
Biological name :COL5A1
  
Synonyms : COL5A1 / collagen type V alpha 1 chain / P20908
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.3
Gene start: 134641774
Gene end: 134844843
  
Corresponding Affymetrix probe sets: 203325_s_at (Human Genome U133 Plus 2.0 Array)   212488_at (Human Genome U133 Plus 2.0 Array)   212489_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360885
Ensembl peptide - ENSP00000481360
Ensembl peptide - ENSP00000360882
NCBI entrez gene - 1289     See in Manteia.
OMIM - 120215
RefSeq - XM_017014266
RefSeq - NM_000093
RefSeq - NM_001278074
RefSeq Peptide - NP_000084
RefSeq Peptide - NP_001265003
swissprot - P20908
swissprot - A0A024R8E5
swissprot - A0A087WXW9
swissprot - H7BY82
Ensembl - ENSG00000130635
  
Related genetic diseases (OMIM): 130000 - Ehlers-Danlos syndrome, classic type, 1, 130000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col5a1ENSDARG00000012593Danio rerio
 COL5A1ENSGALG00000002546Gallus gallus
 Col5a1ENSMUSG00000026837Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P12107 / COL11A1 / collagen type XI alpha 1 chainENSG0000006071874
P13942 / COL11A2 / collagen type XI alpha 2 chainENSG0000020424864
COL5A3 / P25940 / collagen type V alpha 3 chainENSG0000008057356
COL2A1 / P02458 / collagen type II alpha 1 chainENSG0000013921938
COL3A1 / P02461 / collagen type III alpha 1 chainENSG0000016854236
COL1A1 / P02452 / collagen type I alpha 1 chainENSG0000010882136
Q8IZC6 / COL27A1 / collagen type XXVII alpha 1 chainENSG0000019673935
COL5A2 / P05997 / collagen type V alpha 2 chainENSG0000020426235
COL1A2 / P08123 / collagen type I alpha 2 chainENSG0000016469234
Q17RW2 / COL24A1 / collagen type XXIV alpha 1 chainENSG0000017150232


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0007155 cell adhesion IMP
 biological_processGO:0016477 cell migration IMP
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030199 collagen fibril organization NAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0032964 collagen biosynthetic process IMP
 biological_processGO:0035313 wound healing, spreading of epidermal cells IMP
 biological_processGO:0035989 tendon development IEA
 biological_processGO:0043588 skin development IMP
 biological_processGO:0045112 integrin biosynthetic process IMP
 biological_processGO:0048592 eye morphogenesis IMP
 biological_processGO:0051128 regulation of cellular component organization IEA
 biological_processGO:0097435 supramolecular fiber organization IMP
 biological_processGO:1903225 negative regulation of endodermal cell differentiation IDA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005588 collagen type V trimer TAS
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005178 integrin binding NAS
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008201 heparin binding IEA
 molecular_functionGO:0043394 proteoglycan binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IDA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Syndecan interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
NCAM1 interactions
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000139 Uterine prolapse 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000163 Abnormality of the oral cavity "Abnormality of the opening or hollow part of the mouth." [HPO:curators]
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 HP:0000190 Frenular abnormality "An abnormality of the lingual frenulum, that is of the small fold of mucous membrane that attaches the tongue to the floor of the mouth." [HPO:probinson]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000230 Gingivitis 
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 HP:0000233 Thin vermillion border 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000394 Lop ears "The term lop ear refers to excessive protrusion of the ear from the side of the head, that is, the external ear stands away from the head at a greater than normal angle (Normal angle of the auricle to the median plane averages 25 degrees in boys and 18 degrees in girls). Lop ears are usually larger than normal ears." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000446 Narrow nasal bridge 
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 HP:0000490 Deep set eyes 
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000592 Blue sclerae 
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 HP:0000615 Abnormality of the pupils 
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 HP:0000670 Carious teeth 
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 HP:0000691 Microdontia 
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 HP:0000704 Periodontal disease 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000974 Hyperextensible skin 
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 HP:0000977 Soft skin 
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 HP:0000978 Ecchymoses 
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 HP:0000993 Molluscoid pseudotumors 
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001030 Fragile skin 
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 HP:0001058 Poor wound healing 
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 HP:0001073 Cigarette-paper scars 
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 HP:0001075 Atrophic scars 
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 HP:0001083 Ectopia lentis 
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 HP:0001187 Hyperextensibility of the finger joints "The ability of the finger joints to move beyond their normal range of motion." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001582 Loose, redundant skin 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001622 Premature birth 
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 HP:0001634 Mitral valve prolapse 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0002010 Narrow maxilla 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002076 Migraine 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
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 HP:0002107 Pneumothorax 
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 HP:0002242 Abnormality of the intestines 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002326 Transient ischemic attack 
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 HP:0002586 Peritonitis 
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 HP:0002616 Aortic root dilatation 
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 HP:0002619 Varicose veins 
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 HP:0002642 Arteriovenous fistulas of celiac and mesenteric vessels 
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 HP:0002647 Aortic dissection "Aortic dissection refers to a tear in the intimal layer of the aorta causing a separation between the intima and the medial layers of the aorta." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002797 Osteolysis 
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 HP:0002816 Genu recurvatum 
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 HP:0002900 Hypokalemia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004372 Reduced consciousness/confusion 
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 HP:0004937 pulmonary artery aneurysm 
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 HP:0004942 Aortic aneurysms 
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 HP:0004970 Ascending aortic dilation 
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 HP:0005100 premature birth following premature rupture of fetal membranes 
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 HP:0005222 Bowel diverticula 
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 HP:0005244 Gastrointestinal infarctions 
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 HP:0005294 Arterial dissection 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006316 Irregularly spaced teeth 
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 HP:0006323 Premature deciduous tooth loss 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007900 Hypoplastic lacrimal duct 
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 HP:0008947 Infantile muscular hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in infancy." [HPO:curators]
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 HP:0009906 Aplasia/Hypoplasia of the earlobes "Absence or underdevelopment of the ear lobes." [HPO:curators]
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 HP:0010318 Aplasia/Hypoplasia of the abdominal wall musculature "Absence or underdevelopment of the abdominal wall musculature." [HPO:curators]
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 HP:0010485 Hyperextensibility at elbow "The ability of the elbow joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0010500 Hyperextensibility of the knee "The ability of the knee joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0010648 Dermal translucency "An abnormally increased ability of the skin to permit light to pass through (translucency) such that subcutaneous structures such as veins display an increased degree of visibility." [HPO:curator]
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 HP:0010719 Abnormality of hair texture "An abnormality of the texture of the `hair` (FMA:53667)." [HPO:probinson]
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 HP:0011029 Internal hemorrhage "The presence of `hemorrhage` (MPATH:119) within the `body` (FMA:20394)." [HPO:probinson]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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 HP:0025014 Subcutaneous spheroids "Small, hard cyst-like nodules, freely moveable in the subcutis over the bony prominences of the legs and arms, which have an outer calcified layer with a translucent core on x-ray." [] {comment="PMID:20847697"}
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 HP:0100541 Femoral hernia "A hernia which occurs just below the inguinal ligament, where abdominal contents pass through a naturally occurring weakness called the femoral canal." [HPO:sdoelken]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100645 Cystocele "When the tough fibrous wall between a woman s bladder and her vagina (the pubocervical fascia) is torn, allowing the bladder to herniate into the vagina." [HPO:sdoelken]
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 HP:0100718 Uterine rupture 
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 HP:0100784 Peripheral arteriovenous fistula 
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 HP:0100817 Renovascular hypertension "The presence of `hypertension` (HP:0000822) related to stenosis of the `renal artery` (FMA:14751)." [HPO:probinson]
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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