ENSG00000204262


Homo sapiens

Features
Gene ID: ENSG00000204262
  
Biological name :COL5A2
  
Synonyms : COL5A2 / collagen type V alpha 2 chain / P05997
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q32.2
Gene start: 189031896
Gene end: 189179879
  
Corresponding Affymetrix probe sets: 221729_at (Human Genome U133 Plus 2.0 Array)   221730_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000364000
Ensembl peptide - ENSP00000482184
NCBI entrez gene - 1290     See in Manteia.
OMIM - 120190
RefSeq - NM_000393
RefSeq - XM_011510573
RefSeq Peptide - NP_000384
swissprot - A0A087WYX9
swissprot - P05997
Ensembl - ENSG00000204262
  
Related genetic diseases (OMIM): 130010 - Ehlers-Danlos syndrome, classic type, 2, 130010
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col5a2aENSDARG00000031678Danio rerio
 col5a2bENSDARG00000024847Danio rerio
 COL5A2ENSGALG00000031112Gallus gallus
 Col5a2ENSMUSG00000026042Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL2A1 / P02458 / collagen type II alpha 1 chainENSG0000013921965
COL1A1 / P02452 / collagen type I alpha 1 chainENSG0000010882159
COL3A1 / P02461 / collagen type III alpha 1 chainENSG0000016854254
COL1A2 / P08123 / collagen type I alpha 2 chainENSG0000016469252
COL5A1 / P20908 / collagen type V alpha 1 chainENSG0000013063543
P12107 / COL11A1 / collagen type XI alpha 1 chainENSG0000006071843
P13942 / COL11A2 / collagen type XI alpha 2 chainENSG0000020424841
COL5A3 / P25940 / collagen type V alpha 3 chainENSG0000008057341
Q8IZC6 / COL27A1 / collagen type XXVII alpha 1 chainENSG0000019673937
Q17RW2 / COL24A1 / collagen type XXIV alpha 1 chainENSG0000017150235


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001007  VWFC domain
 IPR008160  Collagen triple helix repeat
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0043588 skin development IEA
 biological_processGO:0048592 eye morphogenesis IMP
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:1903225 negative regulation of endodermal cell differentiation IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005588 collagen type V trimer IMP
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IDA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046332 SMAD binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Syndecan interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
NCAM1 interactions
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000163 Abnormality of the oral cavity "Abnormality of the opening or hollow part of the mouth." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000394 Lop ears "The term lop ear refers to excessive protrusion of the ear from the side of the head, that is, the external ear stands away from the head at a greater than normal angle (Normal angle of the auricle to the median plane averages 25 degrees in boys and 18 degrees in girls). Lop ears are usually larger than normal ears." [HPO:curators]
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000592 Blue sclerae 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000974 Hyperextensible skin 
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 HP:0000977 Soft skin 
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 HP:0000978 Ecchymoses 
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 HP:0000993 Molluscoid pseudotumors 
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 HP:0001030 Fragile skin 
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 HP:0001058 Poor wound healing 
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 HP:0001073 Cigarette-paper scars 
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 HP:0001075 Atrophic scars 
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 HP:0001083 Ectopia lentis 
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 HP:0001187 Hyperextensibility of the finger joints "The ability of the finger joints to move beyond their normal range of motion." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001634 Mitral valve prolapse 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0002010 Narrow maxilla 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002586 Peritonitis 
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 HP:0002616 Aortic root dilatation 
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 HP:0002619 Varicose veins 
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 HP:0002647 Aortic dissection "Aortic dissection refers to a tear in the intimal layer of the aorta causing a separation between the intima and the medial layers of the aorta." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002816 Genu recurvatum 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004942 Aortic aneurysms 
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 HP:0005100 premature birth following premature rupture of fetal membranes 
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 HP:0005222 Bowel diverticula 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006316 Irregularly spaced teeth 
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 HP:0008947 Infantile muscular hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in infancy." [HPO:curators]
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 HP:0010485 Hyperextensibility at elbow "The ability of the elbow joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0010500 Hyperextensibility of the knee "The ability of the knee joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0025014 Subcutaneous spheroids "Small, hard cyst-like nodules, freely moveable in the subcutis over the bony prominences of the legs and arms, which have an outer calcified layer with a translucent core on x-ray." [] {comment="PMID:20847697"}
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 HP:0100541 Femoral hernia "A hernia which occurs just below the inguinal ligament, where abdominal contents pass through a naturally occurring weakness called the femoral canal." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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