ENSG00000168542


Homo sapiens

Features
Gene ID: ENSG00000168542
  
Biological name :COL3A1
  
Synonyms : COL3A1 / collagen type III alpha 1 chain / P02461
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q32.2
Gene start: 188974320
Gene end: 189012746
  
Corresponding Affymetrix probe sets: 201852_x_at (Human Genome U133 Plus 2.0 Array)   211161_s_at (Human Genome U133 Plus 2.0 Array)   215076_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000415346
Ensembl peptide - ENSP00000304408
Ensembl peptide - ENSP00000315243
NCBI entrez gene - 1281     See in Manteia.
OMIM - 120180
RefSeq - NM_000090
RefSeq Peptide - NP_000081
swissprot - H7C435
swissprot - P02461
Ensembl - ENSG00000168542
  
Related genetic diseases (OMIM): 130050 - Ehlers-Danlos syndrome, vascular type, 130050
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL3A1ENSGALG00000035584Gallus gallus
 Col3a1ENSMUSG00000026043Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL1A1 / P02452 / collagen type I alpha 1 chainENSG0000010882162
COL2A1 / P02458 / collagen type II alpha 1 chainENSG0000013921962
COL5A2 / P05997 / collagen type V alpha 2 chainENSG0000020426255
COL1A2 / P08123 / collagen type I alpha 2 chainENSG0000016469253
P12107 / COL11A1 / collagen type XI alpha 1 chainENSG0000006071845
COL5A1 / P20908 / collagen type V alpha 1 chainENSG0000013063545
P13942 / COL11A2 / collagen type XI alpha 2 chainENSG0000020424843
COL5A3 / P25940 / collagen type V alpha 3 chainENSG0000008057341
Q8IZC6 / COL27A1 / collagen type XXVII alpha 1 chainENSG0000019673938
Q17RW2 / COL24A1 / collagen type XXIV alpha 1 chainENSG0000017150235


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001007  VWFC domain
 IPR008160  Collagen triple helix repeat
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0007160 cell-matrix adhesion IDA
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway IDA
 biological_processGO:0007229 integrin-mediated signaling pathway IMP
 biological_processGO:0007507 heart development IMP
 biological_processGO:0007568 aging IEA
 biological_processGO:0009314 response to radiation IDA
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0018149 peptide cross-linking IDA
 biological_processGO:0021987 cerebral cortex development ISS
 biological_processGO:0030168 platelet activation NAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030199 collagen fibril organization NAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0034097 response to cytokine IDA
 biological_processGO:0035025 positive regulation of Rho protein signal transduction ISS
 biological_processGO:0042060 wound healing NAS
 biological_processGO:0043588 skin development IMP
 biological_processGO:0048565 digestive tract development IEA
 biological_processGO:0050776 regulation of immune response TAS
 biological_processGO:0050777 negative regulation of immune response IMP
 biological_processGO:0060414 aorta smooth muscle tissue morphogenesis IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0097435 supramolecular fiber organization IMP
 biological_processGO:2001223 negative regulation of neuron migration ISS
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005586 collagen type III trimer IDA
 cellular_componentGO:0005615 extracellular space NAS
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix TAS
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005178 integrin binding NAS
 molecular_functionGO:0005201 extracellular matrix structural constituent IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046332 SMAD binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IDA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Syndecan interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Scavenging by Class A Receptors
NCAM1 interactions
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000079 Abnormality of the urinary tract 
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 HP:0000139 Uterine prolapse 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000190 Frenular abnormality "An abnormality of the lingual frenulum, that is of the small fold of mucous membrane that attaches the tongue to the floor of the mouth." [HPO:probinson]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000230 Gingivitis 
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 HP:0000233 Thin vermillion border 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000387 Lobeless ears 
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 HP:0000411 Protruding ears 
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 HP:0000444 Beaked nose 
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 HP:0000446 Narrow nasal bridge 
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 HP:0000490 Deep set eyes 
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000592 Blue sclerae 
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 HP:0000615 Abnormality of the pupils 
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 HP:0000670 Carious teeth 
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 HP:0000691 Microdontia 
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 HP:0000704 Periodontal disease 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000974 Hyperextensible skin 
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 HP:0000977 Soft skin 
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 HP:0000978 Ecchymoses 
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 HP:0000993 Molluscoid pseudotumors 
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001030 Fragile skin 
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 HP:0001065 Striae distensae "Thinned, erythematous, depressed bands of atrophic skin. Initially, striae appear as flattened and thinned, pinkish linear regions of the skin. Striae tend to enlarge in length and become reddish or purplish. Later, striae tend to appear as white, depressed bands that are parallel to the lines of skin tension. Striae distensae occur most often in areas that have been subject to distension such as the lower back, buttocks, thighs, breast, abdomen, and shoulders." [HPO:curators]
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 HP:0001073 Cigarette-paper scars 
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 HP:0001123 Visual field defects 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001582 Loose, redundant skin 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001622 Premature birth 
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 HP:0001634 Mitral valve prolapse 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001842 Acroosteolysis (feet) 
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 HP:0002076 Migraine 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
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 HP:0002107 Pneumothorax 
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 HP:0002108 Spontaneous pneumothorax 
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 HP:0002138 Subarachnoid hemorrhage 
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 HP:0002213 Fine hair 
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 HP:0002242 Abnormality of the intestines 
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 HP:0002293 Alopecia of scalp 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002326 Transient ischemic attack 
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 HP:0002363 Abnormality of the brainstem 
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 HP:0002616 Aortic root dilatation 
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 HP:0002619 Varicose veins 
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002642 Arteriovenous fistulas of celiac and mesenteric vessels 
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 HP:0002647 Aortic dissection "Aortic dissection refers to a tear in the intimal layer of the aorta causing a separation between the intima and the medial layers of the aorta." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002797 Osteolysis 
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 HP:0002900 Hypokalemia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004372 Reduced consciousness/confusion 
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 HP:0004937 pulmonary artery aneurysm 
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 HP:0004944 Cerebral aneurysm "The presence of a localized dilatation or ballooning of a cerebral artery." [HPO:curators]
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 HP:0004970 Ascending aortic dilation 
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 HP:0005244 Gastrointestinal infarctions 
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 HP:0005267 Premature delivery because of cervical insufficiency or membrane fragility 
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 HP:0005294 Arterial dissection 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006201 Hypermobility of distal interphalangeal joints 
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 HP:0006323 Premature deciduous tooth loss 
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 HP:0006480 Premature loss of teeth 
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 HP:0007029 Cerebral berry aneurysms 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0007900 Hypoplastic lacrimal duct 
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 HP:0009771 Osteolytic defects of the phalanges of the hand "Dissolution or degeneration of bone tissue of the phalanges of the hand." [HPO:curators]
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 HP:0009906 Aplasia/Hypoplasia of the earlobes "Absence or underdevelopment of the ear lobes." [HPO:curators]
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 HP:0010318 Aplasia/Hypoplasia of the abdominal wall musculature "Absence or underdevelopment of the abdominal wall musculature." [HPO:curators]
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0010648 Dermal translucency "An abnormally increased ability of the skin to permit light to pass through (translucency) such that subcutaneous structures such as veins display an increased degree of visibility." [HPO:curator]
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 HP:0010719 Abnormality of hair texture "An abnormality of the texture of the `hair` (FMA:53667)." [HPO:probinson]
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 HP:0011029 Internal hemorrhage "The presence of `hemorrhage` (MPATH:119) within the `body` (FMA:20394)." [HPO:probinson]
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 HP:0012246 Oculomotor nerve palsy "Reduced ability to control the movement of the eye associated with damage to the third cranial nerve (the oculomotor nerve)." [HPO:probinson]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0012518 Abnormality of circle of Willis "An anomaly of the `circle of Willis` (FMA:50454), also known as the cerebral arterial circle." [HPO:probinson]
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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 HP:0040197 Encephalomalacia "Encephalomalacia is the softening or loss of brain tissue after cerebral infarction, cerebral ischemia, infection, craniocerebral trauma, or other injury." [PhenoTips:CHum]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100645 Cystocele "When the tough fibrous wall between a woman s bladder and her vagina (the pubocervical fascia) is torn, allowing the bladder to herniate into the vagina." [HPO:sdoelken]
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 HP:0100718 Uterine rupture 
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 HP:0100784 Peripheral arteriovenous fistula 
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 HP:0100817 Renovascular hypertension "The presence of `hypertension` (HP:0000822) related to stenosis of the `renal artery` (FMA:14751)." [HPO:probinson]
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000072682 P4HA2 / O15460 / prolyl 4-hydroxylase subunit alpha 2  / reaction
 ENSG00000122884 P4HA1 / P13674 / prolyl 4-hydroxylase subunit alpha 1  / reaction
 ENSG00000185624 P4HB / P07237 / prolyl 4-hydroxylase subunit beta  / complex / reaction
 ENSG00000149380 P4HA3 / Q7Z4N8 / prolyl 4-hydroxylase subunit alpha 3  / reaction






 

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