ENSGALG00000035584


Gallus gallus

Features
Gene ID: ENSGALG00000035584
  
Biological name :COL3A1
  
Synonyms : COL3A1 / collagen type III alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(III) chain / P02461 / P08121
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 578995
Gene end: 896831
  
Corresponding Affymetrix probe sets: Gga.12342.1.S1_at (Chicken Array)   Gga.13740.1.A1_at (Chicken Array)   Gga.13740.1.S1_at (Chicken Array)   Gga.16199.1.S1_at (Chicken Array)   Gga.16844.1.S1_a_at (Chicken Array)   Gga.16844.2.S1_at (Chicken Array)   Gga.16844.2.S1_s_at (Chicken Array)   Gga.4851.1.A1_at (Chicken Array)   Gga.4851.1.S1_at (Chicken Array)   GgaAffx.25534.1.S1_s_at (Chicken Array)   GgaAffx.25542.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045430
Ensembl peptide - ENSGALP00000045265
Ensembl peptide - ENSGALP00000061388
Ensembl peptide - ENSGALP00000054499
Ensembl peptide - ENSGALP00000053415
Ensembl peptide - ENSGALP00000052171
Ensembl peptide - ENSGALP00000051057
Ensembl peptide - ENSGALP00000049260
NCBI entrez gene - 396340     See in Manteia.
NCBI entrez gene - 423988     See in Manteia.
RefSeq - XM_421848
RefSeq - NM_205380
RefSeq - XM_004942412
RefSeq - XM_004942414
RefSeq - XM_004942415
RefSeq - XM_004942416
RefSeq - XM_015289138
RefSeq Peptide - NP_990711
swissprot - A0A1D5PNQ6
swissprot - A0A1D5PKQ4
swissprot - A0A1D5PH94
swissprot - A0A1D5P959
swissprot - A0A1D5NYH2
swissprot - A0A1L1RRG0
swissprot - A0A1D5NY11
Ensembl - ENSGALG00000035584
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL3A1ENSG00000168542Homo sapiens
 Col3a1ENSMUSG00000026043Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL5A2 / collagen type V alpha 2 chain / P05997* / Q3U962* / Collagen alpha-2(V) chain *ENSGALG0000003111255
COL1A2 / P02467 / Collagen alpha-2(I) chain / P08123* / Q01149* / collagen type I alpha 2 chain*ENSGALG0000000964152
COL5A1 / collagen alpha-1(V) chain precursor / P20908* / O88207* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain*ENSGALG0000000254643
COL24A1 / collagen type XXIV alpha 1 chain / Q17RW2* / Q30D77* / Collagen alpha-1(XXIV) chain *ENSGALG0000000686429
COL11A1 / collagen type XI alpha 1 chain / P12107* / Q61245* / Collagen alpha-1(XI) chain *ENSGALG0000000518027


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001007  VWFC domain
 IPR006020  PTB/PI domain
 IPR008160  Collagen triple helix repeat
 IPR011993  PH-like domain superfamily
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0009314 response to radiation IEA
 biological_processGO:0018149 peptide cross-linking IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0034097 response to cytokine IEA
 biological_processGO:0035025 positive regulation of Rho protein signal transduction IEA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0048565 digestive tract development IEA
 biological_processGO:0050777 negative regulation of immune response IEA
 biological_processGO:0060414 aorta smooth muscle tissue morphogenesis IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0097435 supramolecular fiber organization IEA
 biological_processGO:2001223 negative regulation of neuron migration IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005586 collagen type III trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0002020 protease binding IEA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0046332 SMAD binding IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
NCAM1 interactions
MET activates PTK2 signaling
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr