ENSGALG00000009641


Gallus gallus

Features
Gene ID: ENSGALG00000009641
  
Biological name :COL1A2
  
Synonyms : COL1A2 / Collagen alpha-2(I) chain / P02467
  
Possible biological names infered from orthology : collagen type I alpha 2 chain / P08123 / Q01149
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 23601205
Gene end: 23640175
  
Corresponding Affymetrix probe sets: Gga.11887.1.S1_at (Chicken Array)   Gga.3607.1.S1_a_at (Chicken Array)   Gga.3607.2.S1_at (Chicken Array)   GgaAffx.22984.1.S1_x_at (Chicken Array)   GgaAffx.22988.1.S1_at (Chicken Array)   GgaAffx.22999.1.S1_s_at (Chicken Array)   GgaAffx.6053.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060151
Ensembl peptide - ENSGALP00000015687
NCBI entrez gene - 396243     See in Manteia.
RefSeq - NM_001079714
RefSeq Peptide - NP_001073182
swissprot - P02467
swissprot - A0A1L1RMY1
Ensembl - ENSGALG00000009641
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col1a2ENSDARG00000020007Danio rerio
 COL1A2ENSG00000164692Homo sapiens
 Col1a2ENSMUSG00000029661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL5A2 / collagen type V alpha 2 chain / P05997* / Q3U962* / Collagen alpha-2(V) chain *ENSGALG0000003111258
COL3A1 / collagen type III alpha 1 chain / P02461* / P08121* / Collagen alpha-1(III) chain *ENSGALG0000003558456
COL5A1 / collagen alpha-1(V) chain precursor / P20908* / O88207* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain*ENSGALG0000000254646
COL24A1 / collagen type XXIV alpha 1 chain / Q17RW2* / Q30D77* / Collagen alpha-1(XXIV) chain *ENSGALG0000000686430
COL11A1 / collagen type XI alpha 1 chain / P12107* / Q61245* / Collagen alpha-1(XI) chain *ENSGALG0000000518029


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway IEA
 biological_processGO:0007266 Rho protein signal transduction IEA
 biological_processGO:0008217 regulation of blood pressure IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0043589 skin morphogenesis IEA
 biological_processGO:0070208 protein heterotrimerization IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005583 fibrillar collagen trimer IDA
 cellular_componentGO:0005584 collagen type I trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0002020 protease binding IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0030674 protein binding, bridging IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0046332 SMAD binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
GP1b-IX-V activation signalling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000038290 P4HB / protein disulfide-isomerase precursor / P09103* / P07237* / prolyl 4-hydroxylase subunit beta* / prolyl 4-hydroxylase, beta polypeptide*  / complex / reaction






 

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