ENSGALG00000002546


Gallus gallus

Features
Gene ID: ENSGALG00000002546
  
Biological name :COL5A1
  
Synonyms : COL5A1 / collagen alpha-1(V) chain precursor
  
Possible biological names infered from orthology : Collagen alpha-1(V) chain / collagen type V alpha 1 chain / O88207 / P20908
  
Species: Gallus gallus
  
Chr. number: 17
Strand: 1
Band:
Gene start: 7910288
Gene end: 8039020
  
Corresponding Affymetrix probe sets: Gga.2592.1.S1_at (Chicken Array)   Gga.2592.1.S2_at (Chicken Array)   Gga.4305.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051075
Ensembl peptide - ENSGALP00000004011
NCBI entrez gene - 395568     See in Manteia.
RefSeq - XM_015279318
RefSeq - NM_204790
RefSeq Peptide - NP_990121
swissprot - A0A1D5PE74
swissprot - F1NI79
Ensembl - ENSGALG00000002546
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col5a1ENSDARG00000012593Danio rerio
 COL5A1ENSG00000130635Homo sapiens
 Col5a1ENSMUSG00000026837Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL11A1 / collagen type XI alpha 1 chain / P12107* / Q61245* / Collagen alpha-1(XI) chain *ENSGALG0000000518041
COL5A2 / collagen type V alpha 2 chain / P05997* / Q3U962* / Collagen alpha-2(V) chain *ENSGALG0000003111235
COL1A2 / P02467 / Collagen alpha-2(I) chain / P08123* / Q01149* / collagen type I alpha 2 chain*ENSGALG0000000964134
COL3A1 / collagen type III alpha 1 chain / P02461* / P08121* / Collagen alpha-1(III) chain *ENSGALG0000003558434
COL24A1 / collagen type XXIV alpha 1 chain / Q17RW2* / Q30D77* / Collagen alpha-1(XXIV) chain *ENSGALG0000000686423


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0032964 collagen biosynthetic process IEA
 biological_processGO:0035313 wound healing, spreading of epidermal cells IEA
 biological_processGO:0035989 tendon development IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0045112 integrin biosynthetic process IEA
 biological_processGO:0048592 eye morphogenesis IEA
 biological_processGO:0051128 regulation of cellular component organization IEA
 biological_processGO:0097435 supramolecular fiber organization IEA
 biological_processGO:1903225 negative regulation of endodermal cell differentiation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005588 collagen type V trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0008201 heparin binding IEA
 molecular_functionGO:0043394 proteoglycan binding IEA
 molecular_functionGO:0048407 platelet-derived growth factor binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr