ENSDARG00000012674


Danio rerio

Features
Gene ID: ENSDARG00000012674
  
Biological name :rpusd4
  
Synonyms : Q6DBR0 / RNA pseudouridylate synthase domain containing 4 / rpusd4
  
Possible biological names infered from orthology : Mitochondrial RNA pseudouridine synthase Rpusd4 / Q14AI6 / Q6P087 / Q96CM3 / Q9CWX4 / RNA pseudouridylate synthase domain containing 3 / RPUSD3
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 17964689
Gene end: 18081864
  
Corresponding Affymetrix probe sets: Dr.22105.1.A1_at (Zebrafish Array)   NM_001003495_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000011603
Ensembl peptide - ENSDARP00000144970
Ensembl peptide - ENSDARP00000152597
NCBI entrez gene - 445101     See in Manteia.
RefSeq - NM_001003495
RefSeq Peptide - NP_001003495
swissprot - Q6DBR0
ZFIN ID - ZDB-GENE-040801-238
Ensembl - ENSDARG00000012674
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPUSD4ENSGALG00000024326Gallus gallus
 Q6P087ENSG00000156990Homo sapiens
 Q96CM3ENSG00000165526Homo sapiens
 Q14AI6ENSMUSG00000051169Mus musculus
 Q9CWX4ENSMUSG00000032044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006145  Pseudouridine synthase, RsuA/RluB/C/D/E/F
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:0031119 tRNA pseudouridine synthesis IBA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IBA
 molecular_functionGO:0016853 isomerase activity IEA
 molecular_functionGO:0019239 deaminase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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