ENSDARG00000013526


Danio rerio

Features
Gene ID: ENSDARG00000013526
  
Biological name :svep1
  
Synonyms : sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 / svep1
  
Possible biological names infered from orthology : A2AVA0 / Q4LDE5 / Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 24251367
Gene end: 24357169
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000142845
NCBI entrez gene - 567357     See in Manteia.
RefSeq - XM_021477789
RefSeq - XM_009303134
RefSeq - XM_021477790
RefSeq - XM_690650
swissprot - A0A1D5NSM8
ZFIN ID - ZDB-GENE-110726-1
Ensembl - ENSDARG00000013526
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SVEP1ENSGALG00000015721Gallus gallus
 SVEP1ENSG00000165124Homo sapiens
 Svep1ENSMUSG00000028369Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
csmd2 / CUB and Sushi multiple domains 2 / Q7Z408*ENSDARG0000000155920
CSMD3 (1 of many) / si:ch211-236p22.1 / CSMD3* / Q7Z407* / Q80T79* / CUB and Sushi multiple domains 3* / CUB and sushi domain-containing protein 3 *ENSDARG0000007790519
CSMD3 (1 of many) / si:ch211-236p22.1 / si:ch211-233f16.1 / CSMD3* / Q7Z407* / Q80T79* / CUB and Sushi multiple domains 3* / CUB and sushi domain-containing protein 3 *ENSDARG0000007792019
sez6a / seizure related 6 homolog a / SEZ6* / Q7TSK2* / Q53EL9* / Seizure protein 6 * / seizure related 6 homolog*ENSDARG000001008765
sez6l / seizure related 6 homolog (mouse)-like / Q6P1D5* / Q9BYH1* / seizure related 6 homolog like*ENSDARG000001005945
sez6b / seizure related 6 homolog b / SEZ6* / Q7TSK2* / Q53EL9* / Seizure protein 6 * / seizure related 6 homolog*ENSDARG000000794145
sez6l2 / seizure related 6 homolog (mouse)-like 2 / Q4V9Z5* / Q6UXD5* / Seizure 6-like protein 2 * / seizure related 6 homolog like 2*ENSDARG000000760524


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000436  Sushi/SCR/CCP domain
 IPR000742  EGF-like domain
 IPR001759  Pentraxin-related
 IPR001881  EGF-like calcium-binding domain
 IPR002035  von Willebrand factor, type A
 IPR003410  HYR domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011641  Tyrosine-protein kinase ephrin type A/B receptor-like
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024731  EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001945 lymph vessel development IMP
 biological_processGO:0009913 epidermal cell differentiation IMP
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain physical object quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000105 epidermis epidermis rough , abnormal
epidermis cell adhesion disrupted , abnormal
Show

 ZFA:0000107 eye eye edematous , abnormal
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 ZFA:0000114 heart heart physical object quality , abnormal
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 ZFA:0000477 posterior cardinal vein posterior cardinal vein vascular sprouts decreased amount , abnormal
Show

 ZFA:0001057 intersegmental vein intersegmental vein decreased amount , abnormal
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 ZFA:0001061 intersegmental artery intersegmental artery increased amount , abnormal
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 ZFA:0001094 whole organism whole organism lacks parts or has fewer parts of type thoracic duct , abnormal
whole organism lacks all parts of type thoracic duct , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton physical object quality , abnormal
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 ZFA:0001338 intestine intestine edematous , abnormal
Show

 ZFA:0005110 thoracic duct thoracic duct aplastic , abnormal
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 ZFA:0005319 intersegmental lymph vessel intersegmental lymph vessel aplastic , abnormal
Show

 ZFA:0009158 keratinocyte keratinocyte morphology , abnormal
Show

 ZFA:0009395 vascular lymphangioblast vascular lymphangioblast decreased amount , abnormal
vascular lymphangioblast position , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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