ENSDARG00000015968


Danio rerio

Features
Gene ID: ENSDARG00000015968
  
Biological name :rabgef1l
  
Synonyms : rabgef1l / RAB guanine nucleotide exchange factor (GEF) 1, like
  
Possible biological names infered from orthology : AC027644.4 / Q9JM13 / Q9UJ41 / Rab5 GDP/GTP exchange factor / RABGEF1 / RAB guanine nucleotide exchange factor 1
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 1718668
Gene end: 1733259
  
Corresponding Affymetrix probe sets: Dr.21045.1.S1_at (Zebrafish Array)   NM_200941_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000013482
Ensembl peptide - ENSDARP00000127961
NCBI entrez gene - 393915     See in Manteia.
RefSeq - NM_200941
RefSeq Peptide - NP_957235
swissprot - F1R8D3
swissprot - X1WCL7
ZFIN ID - ZDB-GENE-040426-813
Ensembl - ENSDARG00000015968
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000021611Gallus gallus
 AC027644.4ENSG00000284461Homo sapiens
 Q9UJ41ENSG00000154710Homo sapiens
 Q9JM13ENSMUSG00000025340Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rabgef1 / RAB guanine nucleotide exchange factor (GEF) 1 / Q9JM13* / Q9UJ41* / AC027644.4* / Rab5 GDP/GTP exchange factor * / RAB guanine nucleotide exchange factor 1*ENSDARG0000001443055
gapvd1 / GTPase activating protein and VPS9 domains 1 / Q14C86* / Q6PAR5* / GTPase-activating protein and VPS9 domain-containing protein 1 *ENSDARG000000901836


Protein motifs (from Interpro)
Interpro ID Name
 IPR002653  Zinc finger, A20-type
 IPR003123  VPS9 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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