ENSDARG00000016363


Danio rerio

Features
Gene ID: ENSDARG00000016363
  
Biological name :her8a
  
Synonyms : hairy-related 8a / her8a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 26429941
Gene end: 26436480
  
Corresponding Affymetrix probe sets: Dr.25187.1.S1_a_at (Zebrafish Array)   Dr.25187.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000010206
Ensembl peptide - ENSDARP00000111735
NCBI entrez gene - 323656     See in Manteia.
swissprot - F1QI81
ZFIN ID - ZDB-GENE-030131-2376
Ensembl - ENSDARG00000016363
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
her8.2 / hairy-related 8.2ENSDARG0000006967541
her6 / hairy-related 6 / HES1* / Q14469* / P35428* / Transcription factor HES-1 * / hes family bHLH transcription factor 1*ENSDARG0000000651431
her9 / hairy-related 9 / HES4* / Q9HCC6* / hes family bHLH transcription factor 4*ENSDARG0000005643830
hes6 / hes family bHLH transcription factor 6ENSDARG0000001933529
her13 / hairy-related 13 / HES6* / Q9JHE6* / Q96HZ4* / Transcription cofactor HES-6 * / hes family bHLH transcription factor 6*ENSDARG0000000709727
hes2.2 / hes family bHLH transcription factor 2, tandem duplicate 2 / HES2* / O54792* / Q9Y543* / Transcription factor HES-2 * / hes family bHLH transcription factor 2*ENSDARG0000006816822
hes2.1 / hes family bHLH transcription factor 2, tandem duplicate 1 / HES2* / O54792* / Q9Y543* / Transcription factor HES-2 * / hes family bHLH transcription factor 2*ENSDARG0000007489717


Protein motifs (from Interpro)
Interpro ID Name
 IPR003650  Orange domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0042063 gliogenesis IMP
 biological_processGO:0050768 negative regulation of neurogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye edematous , abnormal
Show

 ZFA:0000822 rhombomere 2 rhombomere 2 neuron mislocalised , abnormal
Show

 ZFA:0001032 rhombomere 4 rhombomere 4 neuron mislocalised , abnormal
Show

 ZFA:0001115 trunk trunk bent , abnormal
Show

 ZFA:0001656 pleuroperitoneal cavity pleuroperitoneal cavity edematous , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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