ENSDARG00000056438


Danio rerio

Features
Gene ID: ENSDARG00000056438
  
Biological name :her9
  
Synonyms : hairy-related 9 / her9
  
Possible biological names infered from orthology : HES4 / hes family bHLH transcription factor 4 / Q9HCC6
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 23399520
Gene end: 23401305
  
Corresponding Affymetrix probe sets: Dr.3824.1.S1_at (Zebrafish Array)   NM_131873_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000073394
NCBI entrez gene - 140613     See in Manteia.
RefSeq - XM_005162143
RefSeq - NM_131873
RefSeq Peptide - NP_571948
swissprot - Q9DF41
ZFIN ID - ZDB-GENE-011213-1
Ensembl - ENSDARG00000056438
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HES4ENSGALG00000002055Gallus gallus
 HES4ENSG00000188290Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
her6 / hairy-related 6 / HES1* / Q14469* / P35428* / Transcription factor HES-1 * / hes family bHLH transcription factor 1*ENSDARG0000000651459
her8a / hairy-related 8aENSDARG0000001636323
her8.2 / hairy-related 8.2ENSDARG0000006967522
hes2.2 / hes family bHLH transcription factor 2, tandem duplicate 2 / HES2* / O54792* / Q9Y543* / Transcription factor HES-2 * / hes family bHLH transcription factor 2*ENSDARG0000006816821
hes6 / hes family bHLH transcription factor 6ENSDARG0000001933520
her13 / hairy-related 13 / HES6* / Q9JHE6* / Q96HZ4* / Transcription cofactor HES-6 * / hes family bHLH transcription factor 6*ENSDARG0000000709719
hes2.1 / hes family bHLH transcription factor 2, tandem duplicate 1 / HES2* / O54792* / Q9Y543* / Transcription factor HES-2 * / hes family bHLH transcription factor 2*ENSDARG0000007489718


Protein motifs (from Interpro)
Interpro ID Name
 IPR003650  Orange domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0050768 negative regulation of neurogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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