ENSDARG00000019335


Danio rerio

Features
Gene ID: ENSDARG00000019335
  
Biological name :hes6
  
Synonyms : hes6 / hes family bHLH transcription factor 6
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 48288461
Gene end: 48304696
  
Corresponding Affymetrix probe sets: Dr.19467.1.A1_at (Zebrafish Array)   NM_194400_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000021078
Ensembl peptide - ENSDARP00000118664
NCBI entrez gene - 373116     See in Manteia.
RefSeq - NM_194400
RefSeq Peptide - NP_919381
swissprot - F1QMG5
swissprot - E9QI80
ZFIN ID - ZDB-GENE-030828-5
Ensembl - ENSDARG00000019335
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
her13 / hairy-related 13 / HES6* / Q9JHE6* / Q96HZ4* / Transcription cofactor HES-6 * / hes family bHLH transcription factor 6*ENSDARG0000000709749
her8a / hairy-related 8aENSDARG0000001636329
her8.2 / hairy-related 8.2ENSDARG0000006967526
her9 / hairy-related 9 / HES4* / Q9HCC6* / hes family bHLH transcription factor 4*ENSDARG0000005643825
her6 / hairy-related 6 / HES1* / Q14469* / P35428* / Transcription factor HES-1 * / hes family bHLH transcription factor 1*ENSDARG0000000651423
hes2.2 / hes family bHLH transcription factor 2, tandem duplicate 2 / HES2* / O54792* / Q9Y543* / Transcription factor HES-2 * / hes family bHLH transcription factor 2*ENSDARG0000006816819
hes2.1 / hes family bHLH transcription factor 2, tandem duplicate 1 / HES2* / O54792* / Q9Y543* / Transcription factor HES-2 * / hes family bHLH transcription factor 2*ENSDARG0000007489715


Protein motifs (from Interpro)
Interpro ID Name
 IPR003650  Orange domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IGI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0017053 transcriptional repressor complex IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IPI
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000066 proctodeum proctodeum mislocalised anteriorly , abnormal
Show

 ZFA:0000155 somite somite anterior-posterior axis increased length , abnormal
Show

 ZFA:0001056 myotome myotome morphology , abnormal
Show

 ZFA:0001115 trunk trunk has fewer parts of type myotome , abnormal
Show

 ZFA:0001162 anal fin anal fin mislocalised anteriorly , abnormal
Show

 ZFA:0001173 dorsal fin dorsal fin mislocalised anteriorly , abnormal
Show

 ZFA:0001559 vertebral column vertebral column has fewer parts of type vertebra , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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