ENSDARG00000016699


Danio rerio

Features
Gene ID: ENSDARG00000016699
  
Biological name :trpa1a
  
Synonyms : transient receptor potential cation channel, subfamily A, member 1a / trpa1a
  
Possible biological names infered from orthology : O75762 / Q8BLA8 / transient receptor potential cation channel subfamily A member 1 / TRPA1
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 30116486
Gene end: 30135446
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119200
NCBI entrez gene - 474351     See in Manteia.
RefSeq - NM_001007065
RefSeq - XM_017358267
RefSeq Peptide - NP_001007066
swissprot - F1R7I3
ZFIN ID - ZDB-GENE-050105-6
Ensembl - ENSDARG00000016699
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPA1ENSGALG00000034751Gallus gallus
 TRPA1ENSG00000104321Homo sapiens
 Trpa1ENSMUSG00000032769Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpa1b / transient receptor potential cation channel, subfamily A, member 1b / TRPA1* / O75762* / Q8BLA8* / transient receptor potential cation channel subfamily A member 1*ENSDARG0000003187557
ankrd27 / ankyrin repeat domain 27 (VPS9 domain) / Q96NW4* / Q3UMR0* / ankyrin repeat domain 27* / Ankyrin repeat domain-containing protein 27 *ENSDARG0000008920711


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR005821  Ion transport domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0009593 detection of chemical stimulus IDA
 biological_processGO:0034220 ion transmembrane transport IDA
 biological_processGO:0050974 detection of mechanical stimulus involved in sensory perception IMP
 biological_processGO:0051209 release of sequestered calcium ion into cytosol IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane ISS
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0008381 mechanosensitive ion channel activity IMP
 molecular_functionGO:0015276 ligand-gated ion channel activity IDA
 molecular_functionGO:0015278 calcium-release channel activity IDA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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