ENSDARG00000031875


Danio rerio

Features
Gene ID: ENSDARG00000031875
  
Biological name :trpa1b
  
Synonyms : transient receptor potential cation channel, subfamily A, member 1b / trpa1b
  
Possible biological names infered from orthology : O75762 / Q8BLA8 / transient receptor potential cation channel subfamily A member 1 / TRPA1
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 13635108
Gene end: 13715761
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000106127
Ensembl peptide - ENSDARP00000145424
Ensembl peptide - ENSDARP00000096775
NCBI entrez gene - 474353     See in Manteia.
RefSeq - NM_001007066
RefSeq Peptide - NP_001007067
swissprot - B6D5I5
swissprot - F1R8I6
ZFIN ID - ZDB-GENE-050106-1
Ensembl - ENSDARG00000031875
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPA1ENSGALG00000034751Gallus gallus
 TRPA1ENSG00000104321Homo sapiens
 Trpa1ENSMUSG00000032769Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpa1a / transient receptor potential cation channel, subfamily A, member 1a / TRPA1* / O75762* / Q8BLA8* / transient receptor potential cation channel subfamily A member 1*ENSDARG0000001669957
ankrd27 / ankyrin repeat domain 27 (VPS9 domain) / Q96NW4* / Q3UMR0* / ankyrin repeat domain 27* / Ankyrin repeat domain-containing protein 27 *ENSDARG0000008920710


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR005821  Ion transport domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007635 chemosensory behavior IMP
 biological_processGO:0034220 ion transmembrane transport IDA
 biological_processGO:0050907 detection of chemical stimulus involved in sensory perception IDA
 biological_processGO:0050968 detection of chemical stimulus involved in sensory perception of pain IGI
 biological_processGO:0050974 detection of mechanical stimulus involved in sensory perception ISS
 biological_processGO:0051209 release of sequestered calcium ion into cytosol IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane ISS
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0008381 mechanosensitive ion channel activity ISS
 molecular_functionGO:0015276 ligand-gated ion channel activity IDA
 molecular_functionGO:0015278 calcium-release channel activity IDA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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