ENSDARG00000016867


Danio rerio

Features
Gene ID: ENSDARG00000016867
  
Biological name :rnf128a
  
Synonyms : ring finger protein 128a / rnf128a
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF128 / E3 ubiquitin-protein ligase RNF133 / G3X9R7 / Q14B02 / Q8N7C7 / Q8TEB7 / Q8WVZ7 / Q9D304 / ring finger protein 128, E3 ubiquitin protein ligase / ring finger protein 133 / ring finger protein 148 / RNF128 / RNF133 / RNF148
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 23677420
Gene end: 23696926
  
Corresponding Affymetrix probe sets: Dr.4850.1.A1_at (Zebrafish Array)   NM_212615_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000020552
NCBI entrez gene - 322325     See in Manteia.
RefSeq - NM_212615
RefSeq Peptide - NP_997780
swissprot - Q6NX00
ZFIN ID - ZDB-GENE-030131-1044
Ensembl - ENSDARG00000016867
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041977Gallus gallus
 Q8N7C7ENSG00000235631Homo sapiens
 Q8TEB7ENSG00000133135Homo sapiens
 Q8WVZ7ENSG00000188050Homo sapiens
 G3X9R7ENSMUSG00000078179Mus musculus
 Q14B02ENSMUSG00000051956Mus musculus
 Q9D304ENSMUSG00000031438Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf150a / ring finger protein 150a / Q5DTZ6* / Q9ULK6* / RNF150* / ring finger protein 150*ENSDARG0000002482735
Q566M8 / rnf150b / ring finger protein 150b / Q9ULK6* / RNF150* / Q5DTZ6* / ring finger protein 150*ENSDARG0000000952433
rnf130 / ring finger protein 130 / Q86XS8* / Q8VEM1*ENSDARG0000008976731
si:dkeyp-86f7.4 / Q14B02* / Q8N7C7* / Q8TEB7* / Q8WVZ7* / Q9D304* / G3X9R7* / RNF128* / RNF133* / RNF148* / ring finger protein 148* / ring finger protein 133* / E3 ubiquitin-protein ligase...ENSDARG0000002989029
rnf167 / ring finger protein 167 / ZNRF4* / Q9H6Y7* / Q8WWF5* / zinc and ring finger 4*ENSDARG0000001763616
rnf13 / ring finger protein 13 / O43567* / O54965*ENSDARG0000001943816
rnf215 / ring finger protein 215 / Q5SPX3* / Q9Y6U7*ENSDARG0000005942413
znrf3 / zinc and ring finger 3 / Q5SSZ7* / Q9ULT6*ENSDARG0000006257313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003137  PA domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases
Ovarian tumor domain proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000063719 usp8 / ubiquitin specific peptidase 8 / P40818* / Q80U87*  / complex
 ENSDARG00000055536 otub1a / OTU deubiquitinase, ubiquitin aldehyde binding 1a / OTUB1* / Q7TQI3* / Q96FW1* / Ubiquitin thioesterase OTUB1 * / OTU deubiquitinase, ubiquitin aldehyde binding 1*  / complex
 ENSDARG00000011462 otub1b / OTU deubiquitinase, ubiquitin aldehyde binding 1b / OTUB1* / Q7TQI3* / Q96FW1* / Ubiquitin thioesterase OTUB1 * / OTU deubiquitinase, ubiquitin aldehyde binding 1*  / complex






 

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