ENSDARG00000019438


Danio rerio

Features
Gene ID: ENSDARG00000019438
  
Biological name :rnf13
  
Synonyms : ring finger protein 13 / rnf13
  
Possible biological names infered from orthology : O43567 / O54965
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 35131890
Gene end: 35177782
  
Corresponding Affymetrix probe sets: Dr.10545.1.S1_at (Zebrafish Array)   Dr.26023.1.A1_at (Zebrafish Array)   NM_201044_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000141604
Ensembl peptide - ENSDARP00000141254
NCBI entrez gene - 793981     See in Manteia.
RefSeq - NM_201044
RefSeq Peptide - NP_957338
swissprot - A0A0R4IZ61
swissprot - Q6P0H4
ZFIN ID - ZDB-GENE-040426-772
Ensembl - ENSDARG00000019438
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF13ENSGALG00000010411Gallus gallus
 RNF13ENSG00000082996Homo sapiens
 Rnf13ENSMUSG00000036503Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf167 / ring finger protein 167 / ZNRF4* / Q9H6Y7* / Q8WWF5* / zinc and ring finger 4*ENSDARG0000001763647
rnf130 / ring finger protein 130 / Q86XS8* / Q8VEM1*ENSDARG0000008976720
znrf3 / zinc and ring finger 3 / Q5SSZ7* / Q9ULT6*ENSDARG0000006257320
Q566M8 / rnf150b / ring finger protein 150b / Q9ULK6* / RNF150* / Q5DTZ6* / ring finger protein 150*ENSDARG0000000952419
rnf150a / ring finger protein 150a / Q5DTZ6* / Q9ULK6* / RNF150* / ring finger protein 150*ENSDARG0000002482718
rnf128a / ring finger protein 128a / Q8N7C7* / Q8TEB7* / Q8WVZ7* / Q9D304* / RNF148* / G3X9R7* / Q14B02* / RNF128* / RNF133* / ring finger protein 148* / ring finger protein 133* / E3 ubiqu...ENSDARG0000001686716
si:dkeyp-86f7.4 / Q14B02* / Q8N7C7* / Q8TEB7* / Q8WVZ7* / Q9D304* / G3X9R7* / RNF128* / RNF133* / RNF148* / ring finger protein 148* / ring finger protein 133* / E3 ubiquitin-protein ligase...ENSDARG0000002989016
rnf215 / ring finger protein 215 / Q5SPX3* / Q9Y6U7*ENSDARG0000005942414


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003137  PA domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr