ENSGALG00000010411


Gallus gallus

Features
Gene ID: ENSGALG00000010411
  
Biological name :RNF13
  
Synonyms : E3 ubiquitin-protein ligase RNF13 / Q90972 / RNF13
  
Possible biological names infered from orthology : O43567 / O54965 / ring finger protein 13
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 23859933
Gene end: 23888136
  
Corresponding Affymetrix probe sets: Gga.3523.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038118
Ensembl peptide - ENSGALP00000059828
Ensembl peptide - ENSGALP00000051258
NCBI entrez gene - 396303     See in Manteia.
RefSeq - NM_205355
RefSeq Peptide - NP_990686
swissprot - A0A1L1RM43
swissprot - A0A1D5PEQ0
swissprot - Q90972
Ensembl - ENSGALG00000010411
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf13ENSDARG00000019438Danio rerio
 RNF13ENSG00000082996Homo sapiens
 Rnf13ENSMUSG00000036503Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZNRF4* / Q8WWF5* / Q9DAH2* / zinc and ring finger 4*ENSGALG0000003816427
RNF43 / ring finger protein 43 / Q5NCP0* / Q68DV7* / E3 ubiquitin-protein ligase RNF43 *ENSGALG0000000102821
RNF130 / ring finger protein 130 / Q86XS8* / Q8VEM1*ENSGALG0000000582019
RNF148* / Q8TEB7* / Q8WVZ7* / Q9D304* / RNF128* / RNF133* / G3X9R7* / Q14B02* / Q8N7C7* / ring finger protein 148* / ring finger protein 133* / E3 ubiquitin-protein ligase RNF133 * / E3 ubi...ENSGALG0000004197719
RNF150 / ring finger protein 150 / Q5DTZ6* / Q9ULK6*ENSGALG0000000986518
RNF149 / ring finger protein 149 / Q3U2C5* / Q8NC42* / E3 ubiquitin-protein ligase RNF149 *ENSGALG0000001677917
ZNRF3* / Q5SSZ7* / Q9ULT6* / zinc and ring finger 3*ENSGALG0000000580314
RNF215 / ring finger protein 215 / Q5SPX3* / Q9Y6U7*ENSGALG0000004092513
ZNRF3* / Q5SSZ7* / Q9ULT6* / zinc and ring finger 3*ENSGALG000000388614


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003137  PA domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051865 protein autoubiquitination IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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