ENSG00000082996


Homo sapiens

Features
Gene ID: ENSG00000082996
  
Biological name :RNF13
  
Synonyms : O43567 / ring finger protein 13 / RNF13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q25.1
Gene start: 149812708
Gene end: 149962139
  
Corresponding Affymetrix probe sets: 201779_s_at (Human Genome U133 Plus 2.0 Array)   201780_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418308
Ensembl peptide - ENSP00000417655
Ensembl peptide - ENSP00000418863
Ensembl peptide - ENSP00000420667
Ensembl peptide - ENSP00000420510
Ensembl peptide - ENSP00000420124
Ensembl peptide - ENSP00000420067
Ensembl peptide - ENSP00000419836
Ensembl peptide - ENSP00000419809
Ensembl peptide - ENSP00000419508
Ensembl peptide - ENSP00000419069
Ensembl peptide - ENSP00000341361
Ensembl peptide - ENSP00000355268
Ensembl peptide - ENSP00000376628
Ensembl peptide - ENSP00000417294
NCBI entrez gene - 11342     See in Manteia.
OMIM - 609247
RefSeq - XM_017005660
RefSeq - NM_007282
RefSeq - NM_183381
RefSeq - XM_005247092
RefSeq - XM_011512373
RefSeq - XM_011512374
RefSeq - XM_011512376
RefSeq - XM_017005654
RefSeq - XM_017005655
RefSeq - XM_017005656
RefSeq - XM_017005657
RefSeq - XM_017005658
RefSeq - XM_017005659
RefSeq Peptide - NP_009213
RefSeq Peptide - NP_899237
swissprot - C9JYN7
swissprot - C9JU37
swissprot - C9JRV0
swissprot - C9JCY0
swissprot - C9J8T4
swissprot - C9J7B4
swissprot - C9J383
swissprot - F8WDJ5
swissprot - F8WEX6
swissprot - H7C5Q6
swissprot - C9IY58
swissprot - O43567
swissprot - C9JYY4
Ensembl - ENSG00000082996
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf13ENSDARG00000019438Danio rerio
 RNF13ENSGALG00000010411Gallus gallus
 Rnf13ENSMUSG00000036503Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H6Y7 / RNF167 / ring finger protein 167ENSG0000010852344
ZNRF4 / Q8WWF5 / zinc and ring finger 4ENSG0000010542833
RNF43 / Q68DV7 / ring finger protein 43ENSG0000010837521
Q86XS8 / RNF130 / ring finger protein 130ENSG0000011326920
Q9ULK6 / RNF150 / ring finger protein 150ENSG0000017015320
ZNRF3 / Q9ULT6 / zinc and ring finger 3ENSG0000018357920
Q8TEB7 / RNF128 / ring finger protein 128, E3 ubiquitin protein ligaseENSG0000013313519
Q8NC42 / RNF149 / ring finger protein 149ENSG0000016316219
Q8N7C7 / RNF148 / ring finger protein 148ENSG0000023563115
Q8WVZ7 / RNF133 / ring finger protein 133ENSG0000018805015
Q9Y6U7 / RNF215 / ring finger protein 215ENSG0000009999913


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003137  PA domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051865 protein autoubiquitination ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane ISS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031902 late endosome membrane ISS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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