ENSMUSG00000036503


Mus musculus

Features
Gene ID: ENSMUSG00000036503
  
Biological name :Rnf13
  
Synonyms : O54965 / ring finger protein 13 / Rnf13
  
Possible biological names infered from orthology : O43567
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: D
Gene start: 57736062
Gene end: 57835233
  
Corresponding Affymetrix probe sets: 10492180 (MoGene1.0st)   1420620_a_at (Mouse Genome 430 2.0 Array)   1443178_at (Mouse Genome 430 2.0 Array)   1443407_at (Mouse Genome 430 2.0 Array)   1451074_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142594
Ensembl peptide - ENSMUSP00000142462
Ensembl peptide - ENSMUSP00000142828
Ensembl peptide - ENSMUSP00000143692
Ensembl peptide - ENSMUSP00000143498
Ensembl peptide - ENSMUSP00000049331
Ensembl peptide - ENSMUSP00000142335
Ensembl peptide - ENSMUSP00000142451
NCBI entrez gene - 24017     See in Manteia.
MGI - MGI:1346341
RefSeq - XM_006501458
RefSeq - NM_001113413
RefSeq - NM_001304454
RefSeq - NM_001304456
RefSeq - NM_011883
RefSeq - XM_006501457
RefSeq Peptide - NP_001291383
RefSeq Peptide - NP_001291385
RefSeq Peptide - NP_001344009
RefSeq Peptide - NP_036013
RefSeq Peptide - NP_001106884
swissprot - A0A0G2JE17
swissprot - Q3UTG4
swissprot - Q8CB78
swissprot - Q8C4F9
swissprot - A0A0G2JDP6
swissprot - O54965
swissprot - A0A0G2JGT7
swissprot - A0A0G2JEM4
Ensembl - ENSMUSG00000036503
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf13ENSDARG00000019438Danio rerio
 RNF13ENSGALG00000010411Gallus gallus
 RNF13ENSG00000082996Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91XF4 / Rnf167 / E3 ubiquitin-protein ligase RNF167 / Q9H6Y7* / ring finger protein 167*ENSMUSG0000004074644
Znrf4 / Q9DAH2 / zinc and ring finger 4 / Q8WWF5*ENSMUSG0000004452623
Znrf3 / Q5SSZ7 / zinc and ring finger 3 / Q9ULT6*ENSMUSG0000004196122
Rnf43 / Q5NCP0 / E3 ubiquitin-protein ligase RNF43 / Q68DV7* / ring finger protein 43*ENSMUSG0000003417722
Q8VEM1 / Rnf130 / ring finger protein 130 / Q86XS8*ENSMUSG0000002037620
Q9D304 / Rnf128 / E3 ubiquitin-protein ligase RNF128 / Q8TEB7* / ring finger protein 128, E3 ubiquitin protein ligase*ENSMUSG0000003143820
Q5DTZ6 / Rnf150 / RING finger protein 150 / Q9ULK6*ENSMUSG0000004774720
Q3U2C5 / Rnf149 / E3 ubiquitin-protein ligase RNF149 / Q8NC42* / ring finger protein 149*ENSMUSG0000004823419
Q14B02 / Rnf133 / E3 ubiquitin-protein ligase RNF133 / Q8WVZ7* / ring finger protein 133*ENSMUSG0000005195615
G3X9R7 / Rnf148 / RING finger protein 148 / Q8N7C7*ENSMUSG0000007817915
Q5SPX3 / Rnf215 / RING finger protein 215 / Q9Y6U7*ENSMUSG0000000358113


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003137  PA domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051865 protein autoubiquitination IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle ISO
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000556 abnormal hindlimb morphology "malformation of the entire posterior extremities" [MGI:tc]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

 MP:0011396 abnormal sleep behavior "any anomaly in the actions, reactions, or performance of an organism during a periodic, readily reversible state of reduced awareness and metabolic activity" [MGI:smb]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

 MP:0012000 abnormal limb position "anomaly in the location of the limbs on the body relative to other body parts or axes" [MGI:csmith]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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