ENSDARG00000017078


Danio rerio

Features
Gene ID: ENSDARG00000017078
  
Biological name :mespaa
  
Synonyms : mesoderm posterior aa / mespaa
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 15308042
Gene end: 15333427
  
Corresponding Affymetrix probe sets: Dr.8162.1.S1_at (Zebrafish Array)   NM_131551_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005591
Ensembl peptide - ENSDARP00000146114
Ensembl peptide - ENSDARP00000157075
NCBI entrez gene - 58069     See in Manteia.
RefSeq - NM_131551
RefSeq Peptide - NP_571626
swissprot - Q9IAJ4
ZFIN ID - ZDB-GENE-000406-8
Ensembl - ENSDARG00000017078
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mespab / mesoderm posterior abENSDARG0000006876138
mespbb / mesoderm posterior bb / MESP1* / MESP2* / Q9BRJ9* / P97309* / Q0VG99* / Mesoderm posterior protein 1 * / mesoderm posterior bHLH transcription factor 2* / mesoderm posterior bHLH t...ENSDARG0000009794730
mespba / mesoderm posterior ba / MESP1* / MESP2* / Q9BRJ9* / P97309* / Q0VG99* / Mesoderm posterior protein 1 * / mesoderm posterior bHLH transcription factor 2* / mesoderm posterior bHLH t...ENSDARG0000003034729
msgn1 / Q90ZL1 / mesogenin 1 / A6NI15* / Q9JK54*ENSDARG0000007054618


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001702 gastrulation with mouth forming second IMP
 biological_processGO:0001707 mesoderm formation IMP
 biological_processGO:0001757 somite specification IGI
 biological_processGO:0003128 heart field specification IMP
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0032525 somite rostral/caudal axis specification IGI
 biological_processGO:0032526 response to retinoic acid IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0061371 determination of heart left/right asymmetry IMP
 biological_processGO:0097101 blood vessel endothelial cell fate specification IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000028 heart primordium heart primordium right side mislocalised , abnormal
heart primordium absent , abnormal
Show

 ZFA:0001094 whole organism whole organism necrotic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr