ENSDARG00000030347


Danio rerio

Features
Gene ID: ENSDARG00000030347
  
Biological name :mespba
  
Synonyms : mesoderm posterior ba / mespba
  
Possible biological names infered from orthology : mesoderm posterior bHLH transcription factor 1 / mesoderm posterior bHLH transcription factor 2 / Mesoderm posterior protein 1 / MESP1 / MESP2 / P97309 / Q0VG99 / Q9BRJ9
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 15308219
Gene end: 15316731
  
Corresponding Affymetrix probe sets: Dr.8163.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000045384
Ensembl peptide - ENSDARP00000139800
swissprot - F1Q9Z5
ZFIN ID - ZDB-GENE-000406-9
Ensembl - ENSDARG00000030347
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000008275Gallus gallus
 MESP1ENSGALG00000026467Gallus gallus
 MESP1ENSG00000166823Homo sapiens
 MESP2ENSG00000188095Homo sapiens
 Mesp1ENSMUSG00000030544Mus musculus
 Mesp2ENSMUSG00000030543Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mespbb / mesoderm posterior bb / MESP1* / MESP2* / Q9BRJ9* / P97309* / Q0VG99* / Mesoderm posterior protein 1 * / mesoderm posterior bHLH transcription factor 2* / mesoderm posterior bHLH t...ENSDARG0000009794737
mespab / mesoderm posterior abENSDARG0000006876130
mespaa / mesoderm posterior aaENSDARG0000001707828
msgn1 / Q90ZL1 / mesogenin 1 / A6NI15* / Q9JK54*ENSDARG0000007054617


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001707 mesoderm formation IBA
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0001757 somite specification IGI
 biological_processGO:0003007 heart morphogenesis IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0009952 anterior/posterior pattern specification IMP
 biological_processGO:0032525 somite rostral/caudal axis specification IGI
 biological_processGO:0032526 response to retinoic acid IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048641 regulation of skeletal muscle tissue development IGI
 biological_processGO:0061371 determination of heart left/right asymmetry IGI
 biological_processGO:0097101 blood vessel endothelial cell fate specification IMP
 cellular_componentGO:0005634 nucleus IC
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000028 heart primordium heart primordium right side mislocalised , abnormal
heart primordium absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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