ENSDARG00000070546


Danio rerio

Features
Gene ID: ENSDARG00000070546
  
Biological name :msgn1
  
Synonyms : mesogenin 1 / msgn1 / Q90ZL1
  
Possible biological names infered from orthology : A6NI15 / Q9JK54
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 306036
Gene end: 308006
  
Corresponding Affymetrix probe sets: Dr.12386.1.S1_x_at (Zebrafish Array)   Dr.12386.2.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094435
NCBI entrez gene - 360135     See in Manteia.
swissprot - Q90ZL1
ZFIN ID - ZDB-GENE-030722-1
Ensembl - ENSDARG00000070546
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MSGN1ENSGALG00000016469Gallus gallus
 MSGN1ENSG00000151379Homo sapiens
 Msgn1ENSMUSG00000047002Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mespbb / mesoderm posterior bb / MESP1* / MESP2* / Q9BRJ9* / P97309* / Q0VG99* / Mesoderm posterior protein 1 * / mesoderm posterior bHLH transcription factor 2* / mesoderm posterior bHLH t...ENSDARG0000009794734
mespba / mesoderm posterior ba / MESP1* / MESP2* / Q9BRJ9* / P97309* / Q0VG99* / Mesoderm posterior protein 1 * / mesoderm posterior bHLH transcription factor 2* / mesoderm posterior bHLH t...ENSDARG0000003034731
mespaa / mesoderm posterior aaENSDARG0000001707831
mespab / mesoderm posterior abENSDARG0000006876130


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007498 mesoderm development IGI
 biological_processGO:0007525 somatic muscle development IGI
 biological_processGO:0009880 embryonic pattern specification IBA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0042789 mRNA transcription by RNA polymerase II IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048342 paraxial mesodermal cell differentiation IMP
 cellular_componentGO:0005634 nucleus IC
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001076 transcription factor activity, RNA polymerase II transcription factor binding IMP
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000077 tail bud tail bud cellular quality , abnormal
tail bud increased size , abnormal
tail bud decreased cellular motility , abnormal
Show

 ZFA:0000155 somite somite increased amount , abnormal
somite decreased size , abnormal
Show

 ZFA:0000279 segmental plate segmental plate poorly differentiated , abnormal
segmental plate decreased cellular motility , abnormal
Show

 ZFA:0001117 post-vent region post-vent region has extra parts of type somite , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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