ENSDARG00000017454


Danio rerio

Features
Gene ID: ENSDARG00000017454
  
Biological name :nup50
  
Synonyms : nucleoporin 50 / nup50
  
Possible biological names infered from orthology : 1700123L14Rik / Nuclear pore complex protein Nup50 / Q9JIH2 / Q9UKX7 / RIKEN cDNA 1700123L14 gene
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 74928675
Gene end: 74972270
  
Corresponding Affymetrix probe sets: Dr.4718.1.S1_at (Zebrafish Array)   NM_201580_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000143143
Ensembl peptide - ENSDARP00000155325
Ensembl peptide - ENSDARP00000017103
Ensembl peptide - ENSDARP00000137742
NCBI entrez gene - 322969     See in Manteia.
RefSeq - NM_201580
RefSeq Peptide - NP_963874
swissprot - A0A1L1QZM3
swissprot - F1R0E4
ZFIN ID - ZDB-GENE-030131-1689
Ensembl - ENSDARG00000017454
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP50ENSGALG00000014222Gallus gallus
 NUP50ENSG00000093000Homo sapiens
 1700123L14RikENSMUSG00000072878Mus musculus
 Nup50ENSMUSG00000016619Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000156  Ran binding domain
 IPR011993  PH-like domain superfamily
 IPR015007  Nuclear pore complex, NUP2/50/61


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0046907 intracellular transport IEA
 cellular_componentGO:0005643 nuclear pore IBA
 molecular_functionGO:0008536 Ran GTPase binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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