ENSGALG00000014222


Gallus gallus

Features
Gene ID: ENSGALG00000014222
  
Biological name :NUP50
  
Synonyms : NUP50
  
Possible biological names infered from orthology : 1700123L14Rik / Nuclear pore complex protein Nup50 / nucleoporin 50 / Q9JIH2 / Q9UKX7 / RIKEN cDNA 1700123L14 gene
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 70276350
Gene end: 70292392
  
Corresponding Affymetrix probe sets: Gga.16654.1.S1_at (Chicken Array)   GgaAffx.9018.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053635
Ensembl peptide - ENSGALP00000022956
NCBI entrez gene - 418240     See in Manteia.
RefSeq - NM_001012541
RefSeq Peptide - NP_001012559
swissprot - Q5F473
swissprot - A0A1D5PLB9
Ensembl - ENSGALG00000014222
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup50ENSDARG00000017454Danio rerio
 NUP50ENSG00000093000Homo sapiens
 1700123L14RikENSMUSG00000072878Mus musculus
 Nup50ENSMUSG00000016619Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000156  Ran binding domain
 IPR011993  PH-like domain superfamily
 IPR015007  Nuclear pore complex, NUP2/50/61


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0046907 intracellular transport IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008536 Ran GTPase binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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