ENSDARG00000017882


Danio rerio

Features
Gene ID: ENSDARG00000017882
  
Biological name :rdh1
  
Synonyms : rdh1 / retinol dehydrogenase 1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 48673093
Gene end: 48701035
  
Corresponding Affymetrix probe sets: Dr.11033.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000003828
Ensembl peptide - ENSDARP00000143394
NCBI entrez gene - 378440     See in Manteia.
swissprot - A0A286Y8B5
swissprot - F1QKH9
ZFIN ID - ZDB-GENE-030912-15
Ensembl - ENSDARG00000017882
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000042928Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rdh5 / retinol dehydrogenase 5 (11-cis/9-cis) / Q92781* / O55240* / retinol dehydrogenase 5* / Mus musculus retinol dehydrogenase 5 (Rdh5), transcript variant 2, mRNA.*ENSDARG0000000830656
dhrs9 / dehydrogenase/reductase (SDR family) member 9 / Q58NB6* / Q9BPW9* / dehydrogenase/reductase 9*ENSDARG0000001926049
zgc:113142ENSDARG0000003896933
hsd11b2 / hydroxysteroid (11-beta) dehydrogenase 2 / P51661* / P80365*ENSDARG0000000197532
bdh1 / 3-hydroxybutyrate dehydrogenase, type 1 / Q80XN0* / Q02338* / 3-hydroxybutyrate dehydrogenase 1* / D-beta-hydroxybutyrate dehydrogenase, mitochondrial *ENSDARG0000005938831
hsd17b2 / hydroxysteroid (17-beta) dehydrogenase 2 / P37059* / P51658*ENSDARG0000004555330
hsd17b1 / hydroxysteroid (17-beta) dehydrogenase 1 / P14061* / P51656*ENSDARG0000002746925
zgc:109982ENSDARG0000009921721
rdh8b / retinol dehydrogenase 8b / RDH8* / retinol dehydrogenase 8 (all-trans)*ENSDARG0000010506020
rdh8a / retinol dehydrogenase 8a / RDH8* / retinol dehydrogenase 8 (all-trans)*ENSDARG0000002804820
zmp:0000001048ENSDARG0000001621320
dhrs7ca / dehydrogenase/reductase (SDR family) member 7Ca / Q8CHS7* / DHRS7C* / A6NNS2* / dehydrogenase/reductase 7C* / Dehydrogenase/reductase SDR family member 7C *ENSDARG0000003945318
A8E5C5 / dhrs7cb / dehydrogenase/reductase (SDR family) member 7Cb / Q8CHS7* / DHRS7C* / A6NNS2* / dehydrogenase/reductase 7C* / Dehydrogenase/reductase SDR family member 7C *ENSDARG0000007187718
dhrs7 / dehydrogenase/reductase (SDR family) member 7 / Gm4756* / Q9CXR1* / Q9Y394* / dehydrogenase/reductase 7*ENSDARG0000000344417
dhrs7b / dehydrogenase/reductase (SDR family) member 7B / Q6IAN0* / Q99J47* / dehydrogenase/reductase 7B*ENSDARG0000007572617
kdsr / 3-ketodihydrosphingosine reductase / Q06136* / Q6GV12*ENSDARG0000001202115


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IMP
 biological_processGO:0030855 epithelial cell differentiation IMP
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0031018 endocrine pancreas development IMP
 biological_processGO:0035050 embryonic heart tube development IDA
 biological_processGO:0035118 embryonic pectoral fin morphogenesis IMP
 biological_processGO:0042572 retinol metabolic process IDA
 biological_processGO:0042574 retinal metabolic process IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004745 retinol dehydrogenase activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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