ENSDARG00000017901


Danio rerio

Features
Gene ID: ENSDARG00000017901
  
Biological name :tln2a
  
Synonyms : talin 2a / tln2a
  
Possible biological names infered from orthology : Q9Y4G6 / talin 2 / TLN2
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 29863548
Gene end: 29946044
  
Corresponding Affymetrix probe sets: Dr.15009.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113805
Ensembl peptide - ENSDARP00000117762
Ensembl peptide - ENSDARP00000131778
Ensembl peptide - ENSDARP00000133467
NCBI entrez gene - 556842     See in Manteia.
RefSeq - XM_005168882
RefSeq - XM_009303222
RefSeq - XM_009303223
RefSeq - XM_017356865
swissprot - F1QUA3
swissprot - A0A0G2KHJ1
swissprot - A0A0R4IIA7
swissprot - Q0V975
ZFIN ID - ZDB-GENE-040724-263
Ensembl - ENSDARG00000017901
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000046155Gallus gallus
 ENSGALG00000046618Gallus gallus
 ENSGALG00000029816Gallus gallus
 ENSGALG00000003628Gallus gallus
 ENSGALG00000038078Gallus gallus
 TLN2ENSG00000171914Homo sapiens
 Tln2ENSMUSG00000052698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tln1 / talin 1 / P26039* / Q9Y490*ENSDARG0000010072975
tln2b / talin 2b / TLN2* / Q9Y4G6* / talin 2*ENSDARG0000011097352
CABZ01046980.1 / TLN2* / Q9Y4G6* / talin 2*ENSDARG0000011234211
hip1 / huntingtin interacting protein 1 / O00291* / Q8VD75*ENSDARG000000629729
hip1rb / huntingtin interacting protein 1 related b / HIP1R* / O75146* / Q9JKY5* / huntingtin interacting protein 1 related* / Huntingtin-interacting protein 1-related protein *ENSDARG000001024588
hip1ra / huntingtin interacting protein 1 related a / HIP1R* / O75146* / huntingtin interacting protein 1 related*ENSDARG000000606273


Protein motifs (from Interpro)
Interpro ID Name
 IPR000299  FERM domain
 IPR002558  I/LWEQ domain
 IPR006077  Vinculin/alpha-catenin
 IPR011993  PH-like domain superfamily
 IPR014352  FERM/acyl-CoA-binding protein superfamily
 IPR015009  Vinculin-binding site-containing domain
 IPR015224  Talin, central
 IPR018979  FERM, N-terminal
 IPR019747  FERM conserved site
 IPR019748  FERM central domain
 IPR019749  Band 4.1 domain
 IPR029071  Ubiquitin-like domain superfamily
 IPR032425  Talin, N-terminal F0 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007016 cytoskeletal anchoring at plasma membrane IEA
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0001726 ruffle IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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