ENSDARG00000018192


Danio rerio

Features
Gene ID: ENSDARG00000018192
  
Biological name :ubr5
  
Synonyms : ubiquitin protein ligase E3 component n-recognin 5 / ubr5
  
Possible biological names infered from orthology : O95071
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 52542550
Gene end: 52646789
  
Corresponding Affymetrix probe sets: Dr.798.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000033510
NCBI entrez gene - 334627     See in Manteia.
RefSeq - NM_001164394
RefSeq Peptide - NP_001157866
swissprot - F1Q8J2
ZFIN ID - ZDB-GENE-030131-6559
Ensembl - ENSDARG00000018192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBR5ENSGALG00000031282Gallus gallus
 UBR5ENSG00000104517Homo sapiens
 Ubr5ENSMUSG00000037487Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
huwe1 / HECT, UBA and WWE domain containing 1 / Q7Z6Z7* / Q7TMY8* / E3 ubiquitin-protein ligase HUWE1 * / HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase*ENSDARG0000001678215
AREL1 / apoptosis resistant E3 ubiquitin protein ligase 1 / O15033*ENSDARG000001003596


Protein motifs (from Interpro)
Interpro ID Name
 IPR000569  HECT domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003126  Zinc finger, UBR-type
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR024725  E3 ubiquitin ligase EDD, ubiquitin-associated domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0043130 ubiquitin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr