ENSDARG00000019941


Danio rerio

Features
Gene ID: ENSDARG00000019941
  
Biological name :sgta
  
Synonyms : sgta / small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
  
Possible biological names infered from orthology : O43765 / Q8BJU0 / small glutamine rich tetratricopeptide repeat containing alpha
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 14771908
Gene end: 14813063
  
Corresponding Affymetrix probe sets: Dr.472.1.S1_at (Zebrafish Array)   NM_212764_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000027982
Ensembl peptide - ENSDARP00000106380
Ensembl peptide - ENSDARP00000150575
NCBI entrez gene - 336867     See in Manteia.
RefSeq - NM_212764
RefSeq - XM_009305883
RefSeq - XM_021479556
RefSeq Peptide - NP_997929
swissprot - Q6NXA1
swissprot - F1QMG8
ZFIN ID - ZDB-GENE-030131-8811
Ensembl - ENSDARG00000019941
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SGTAENSGALG00000014067Gallus gallus
 SGTAENSG00000104969Homo sapiens
 SgtaENSMUSG00000004937Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sgtb / small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta / Q96EQ0* / Q8VD33* / small glutamine rich tetratricopeptide repeat containing beta* / Small glutamine-rich tetra...ENSDARG0000001676954
ttc12 / tetratricopeptide repeat domain 12 / Q8BW49* / Q9H892*ENSDARG0000005689617
stub1 / STIP1 homology and U-Box containing protein 1 / Q9UNE7* / Q9WUD1*ENSDARG0000004522810


Protein motifs (from Interpro)
Interpro ID Name
 IPR001440  Tetratricopeptide repeat 1
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR032374  SGTA, homodimerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr